Query         537021.9.peg.109_1
Match_columns 66
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Mon May 23 17:39:51 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_109.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3nku_A DRRA, SIDM; posttransla   9.2      96   0.004   13.0   1.2   10    4-13    130-139 (213)
  2 1wyo_A Protein EB3, microtubul   8.0 1.2E+02  0.0049   12.5   1.4   11   15-25    112-122 (159)
  3 2qjx_A Protein BIM1; calponin    7.3 1.3E+02  0.0053   12.3   1.4   12   15-26     99-110 (127)
  4 2r8u_A Microtubule-associated    5.9 1.5E+02  0.0064   11.9   1.4   13   15-27    105-117 (268)
  5 2qjz_A Microtubule-associated    5.1 1.7E+02  0.0072   11.6   1.6   12   15-26     95-106 (123)
  6 1eye_A DHPS 1, dihydropteroate   5.0 1.3E+02  0.0054   12.3   0.1   37   16-57    152-188 (280)
  7 3bbo_5 Ribosomal protein L35;    4.8 1.3E+02  0.0054   12.3   0.0   36    7-43     27-62  (159)
  8 2co5_A Viral protein F93; vira   4.4 1.9E+02  0.0082   11.4   1.1   14   30-43     38-51  (99)
  9 1znp_A Hypothetical protein AT   4.1 1.6E+02  0.0068   11.8   0.1    6   47-52    126-131 (154)
 10 1xe7_A YML079WP, hypothetical    4.0 1.7E+02  0.0071   11.7   0.1    6   47-52    169-174 (203)

No 1  
>3nku_A DRRA, SIDM; posttranslational modification, ampylation, adenylylation, R RAB1, vesicular transport, protein transport; HET: MSE PGE; 2.10A {Legionella pneumophila subsp}
Probab=9.16  E-value=96  Score=12.99  Aligned_cols=10  Identities=50%  Similarity=1.035  Sum_probs=7.3

Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q 537021.9.peg.1    4 LFCQRIFSIT   13 (66)
Q Consensus         4 lfcqrifsit   13 (66)
                      -.|||||...
T Consensus       130 nlcqriftas  139 (213)
T 3nku_A          130 NLCQRIFTAS  139 (213)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHCC
T ss_conf             9999997503


No 2  
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=8.01  E-value=1.2e+02  Score=12.52  Aligned_cols=11  Identities=45%  Similarity=0.948  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999999
Q 537021.9.peg.1   15 SHFAQWFLQFS   25 (66)
Q Consensus        15 shfaqwflqfs   25 (66)
                      -.|+|||-.|-
T Consensus       112 lEFlQWfk~f~  122 (159)
T 1wyo_A          112 FEFIQWFKKFF  122 (159)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999


No 3  
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=7.30  E-value=1.3e+02  Score=12.34  Aligned_cols=12  Identities=25%  Similarity=0.614  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999999
Q 537021.9.peg.1   15 SHFAQWFLQFSV   26 (66)
Q Consensus        15 shfaqwflqfsv   26 (66)
                      -.|+|||-.|--
T Consensus        99 lEFlqWfk~f~d  110 (127)
T 2qjx_A           99 LEFLQWLKKHWI  110 (127)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999999


No 4  
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3gjo_A 1yib_A 1yig_A
Probab=5.95  E-value=1.5e+02  Score=11.94  Aligned_cols=13  Identities=38%  Similarity=0.779  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999998
Q 537021.9.peg.1   15 SHFAQWFLQFSVS   27 (66)
Q Consensus        15 shfaqwflqfsvs   27 (66)
                      -.|.|||-+|--.
T Consensus       105 leflqw~k~~~d~  117 (268)
T 2r8u_A          105 FEFVQWFKKFFDA  117 (268)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999996


No 5  
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=5.09  E-value=1.7e+02  Score=11.64  Aligned_cols=12  Identities=42%  Similarity=0.814  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999999
Q 537021.9.peg.1   15 SHFAQWFLQFSV   26 (66)
Q Consensus        15 shfaqwflqfsv   26 (66)
                      -.|+|||-.|.-
T Consensus        95 leflqWfk~f~d  106 (123)
T 2qjz_A           95 FEFVQWFKKFFD  106 (123)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999998


No 6  
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=5.02  E-value=1.3e+02  Score=12.31  Aligned_cols=37  Identities=22%  Similarity=0.261  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             999999999998885102203568889987167048999757
Q 537021.9.peg.1   16 HFAQWFLQFSVSLLLSADISASVLFPVYWILPGFDFRKILSL   57 (66)
Q Consensus        16 hfaqwflqfsvslllsadisasvlfpvywilpgfdfrkilsl   57 (66)
                      ....||.+ ....++.+.|+..-    .|+=|||.|-|-..-
T Consensus       152 ~v~~~~~~-~~~~~~~~Gi~~~~----IilDPG~GFgKt~~~  188 (280)
T 1eye_A          152 EVRADLLA-SVADAVAAGVDPAR----LVLDPGLGFAKTAQH  188 (280)
T ss_dssp             HHHHHHHH-HHHHHHHTTCCGGG----EEEECCTTSSCCHHH
T ss_pred             HHHHHHHH-HHHHHHHCCCCCCE----EEECCCCCCCCCCCC
T ss_conf             57999999-99999987986444----998088677757625


No 7  
>3bbo_5 Ribosomal protein L35; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=4.79  E-value=1.3e+02  Score=12.31  Aligned_cols=36  Identities=28%  Similarity=0.410  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             9999999999999999999988851022035688899
Q 537021.9.peg.1    7 QRIFSITLSHFAQWFLQFSVSLLLSADISASVLFPVY   43 (66)
Q Consensus         7 qrifsitlshfaqwflqfsvslllsadisasvlfpvy   43 (66)
                      ---|||++++|..-| .-+.++-.++.|+.|-+-|.|
T Consensus        27 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~   62 (159)
T 3bbo_5           27 SAAQGISLTHFNKQL-KSTLNLSSSSSISSSKVQPIV   62 (159)
T ss_dssp             -------------------------------------
T ss_pred             CCCCCEECCCCHHHH-HHHHHHHHHHHCCCCCCCCCC
T ss_conf             533320316320667-767654333310146567764


No 8  
>2co5_A Viral protein F93; viral protein/winged helix, winged helix, DNA-binding, HTH, WHTH, disulfide bond, STIV, archaea; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=4.40  E-value=1.9e+02  Score=11.36  Aligned_cols=14  Identities=43%  Similarity=0.807  Sum_probs=11.1

Q ss_pred             HHCCCHHHHHHHHH
Q ss_conf             51022035688899
Q 537021.9.peg.1   30 LSADISASVLFPVY   43 (66)
Q Consensus        30 lsadisasvlfpvy   43 (66)
                      ...|||..||+|..
T Consensus        38 fdidisdgvlypli   51 (99)
T 2co5_A           38 FDIDISDGVLYPLI   51 (99)
T ss_dssp             HCCBCCHHHHHHHH
T ss_pred             CCCCCCCCEEHHHH
T ss_conf             17774367614568


No 9  
>1znp_A Hypothetical protein ATU3615; X-RAY, NESG, ATR55, Q8U9W0, structural genomics, PSI, protein structure initiative; 2.50A {Agrobacterium tumefaciens str} SCOP: b.82.1.16
Probab=4.10  E-value=1.6e+02  Score=11.78  Aligned_cols=6  Identities=67%  Similarity=1.536  Sum_probs=0.0

Q ss_pred             CCCCHH
Q ss_conf             670489
Q 537021.9.peg.1   47 PGFDFR   52 (66)
Q Consensus        47 pgfdfr   52 (66)
                      |||||+
T Consensus       126 PGF~f~  131 (154)
T 1znp_A          126 PGFAFS  131 (154)
T ss_dssp             SCCCGG
T ss_pred             CCCCCC
T ss_conf             989677


No 10 
>1xe7_A YML079WP, hypothetical 22.5 kDa protein in TUB1-CPR3 intergenic region; jelly roll motif, cupin superfamily, structural genomics; HET: GUN; 1.75A {Saccharomyces cerevisiae} SCOP: b.82.1.16 PDB: 1xe8_A*
Probab=3.98  E-value=1.7e+02  Score=11.69  Aligned_cols=6  Identities=83%  Similarity=1.846  Sum_probs=0.0

Q ss_pred             CCCCHH
Q ss_conf             670489
Q 537021.9.peg.1   47 PGFDFR   52 (66)
Q Consensus        47 pgfdfr   52 (66)
                      |||||+
T Consensus       169 PGFdf~  174 (203)
T 1xe7_A          169 PGFDFE  174 (203)
T ss_dssp             SCCCGG
T ss_pred             CCCCHH
T ss_conf             881566


Done!