Query 537021.9.peg.109_1 Match_columns 66 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Mon May 23 17:39:51 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_109.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3nku_A DRRA, SIDM; posttransla 9.2 96 0.004 13.0 1.2 10 4-13 130-139 (213) 2 1wyo_A Protein EB3, microtubul 8.0 1.2E+02 0.0049 12.5 1.4 11 15-25 112-122 (159) 3 2qjx_A Protein BIM1; calponin 7.3 1.3E+02 0.0053 12.3 1.4 12 15-26 99-110 (127) 4 2r8u_A Microtubule-associated 5.9 1.5E+02 0.0064 11.9 1.4 13 15-27 105-117 (268) 5 2qjz_A Microtubule-associated 5.1 1.7E+02 0.0072 11.6 1.6 12 15-26 95-106 (123) 6 1eye_A DHPS 1, dihydropteroate 5.0 1.3E+02 0.0054 12.3 0.1 37 16-57 152-188 (280) 7 3bbo_5 Ribosomal protein L35; 4.8 1.3E+02 0.0054 12.3 0.0 36 7-43 27-62 (159) 8 2co5_A Viral protein F93; vira 4.4 1.9E+02 0.0082 11.4 1.1 14 30-43 38-51 (99) 9 1znp_A Hypothetical protein AT 4.1 1.6E+02 0.0068 11.8 0.1 6 47-52 126-131 (154) 10 1xe7_A YML079WP, hypothetical 4.0 1.7E+02 0.0071 11.7 0.1 6 47-52 169-174 (203) No 1 >3nku_A DRRA, SIDM; posttranslational modification, ampylation, adenylylation, R RAB1, vesicular transport, protein transport; HET: MSE PGE; 2.10A {Legionella pneumophila subsp} Probab=9.16 E-value=96 Score=12.99 Aligned_cols=10 Identities=50% Similarity=1.035 Sum_probs=7.3 Q ss_pred HHHHHHHHHH Q ss_conf 9999999999 Q 537021.9.peg.1 4 LFCQRIFSIT 13 (66) Q Consensus 4 lfcqrifsit 13 (66) -.|||||... T Consensus 130 nlcqriftas 139 (213) T 3nku_A 130 NLCQRIFTAS 139 (213) T ss_dssp HHHHHHHHHC T ss_pred HHHHHHHHCC T ss_conf 9999997503 No 2 >1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=8.01 E-value=1.2e+02 Score=12.52 Aligned_cols=11 Identities=45% Similarity=0.948 Sum_probs=7.6 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999999 Q 537021.9.peg.1 15 SHFAQWFLQFS 25 (66) Q Consensus 15 shfaqwflqfs 25 (66) -.|+|||-.|- T Consensus 112 lEFlQWfk~f~ 122 (159) T 1wyo_A 112 FEFIQWFKKFF 122 (159) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999999 No 3 >2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae} Probab=7.30 E-value=1.3e+02 Score=12.34 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=7.8 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999999 Q 537021.9.peg.1 15 SHFAQWFLQFSV 26 (66) Q Consensus 15 shfaqwflqfsv 26 (66) -.|+|||-.|-- T Consensus 99 lEFlqWfk~f~d 110 (127) T 2qjx_A 99 LEFLQWLKKHWI 110 (127) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999999 No 4 >2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3gjo_A 1yib_A 1yig_A Probab=5.95 E-value=1.5e+02 Score=11.94 Aligned_cols=13 Identities=38% Similarity=0.779 Sum_probs=8.4 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999998 Q 537021.9.peg.1 15 SHFAQWFLQFSVS 27 (66) Q Consensus 15 shfaqwflqfsvs 27 (66) -.|.|||-+|--. T Consensus 105 leflqw~k~~~d~ 117 (268) T 2r8u_A 105 FEFVQWFKKFFDA 117 (268) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999996 No 5 >2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A Probab=5.09 E-value=1.7e+02 Score=11.64 Aligned_cols=12 Identities=42% Similarity=0.814 Sum_probs=7.9 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999999 Q 537021.9.peg.1 15 SHFAQWFLQFSV 26 (66) Q Consensus 15 shfaqwflqfsv 26 (66) -.|+|||-.|.- T Consensus 95 leflqWfk~f~d 106 (123) T 2qjz_A 95 FEFVQWFKKFFD 106 (123) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999998 No 6 >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 Probab=5.02 E-value=1.3e+02 Score=12.31 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=23.3 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf 999999999998885102203568889987167048999757 Q 537021.9.peg.1 16 HFAQWFLQFSVSLLLSADISASVLFPVYWILPGFDFRKILSL 57 (66) Q Consensus 16 hfaqwflqfsvslllsadisasvlfpvywilpgfdfrkilsl 57 (66) ....||.+ ....++.+.|+..- .|+=|||.|-|-..- T Consensus 152 ~v~~~~~~-~~~~~~~~Gi~~~~----IilDPG~GFgKt~~~ 188 (280) T 1eye_A 152 EVRADLLA-SVADAVAAGVDPAR----LVLDPGLGFAKTAQH 188 (280) T ss_dssp HHHHHHHH-HHHHHHHTTCCGGG----EEEECCTTSSCCHHH T ss_pred HHHHHHHH-HHHHHHHCCCCCCE----EEECCCCCCCCCCCC T ss_conf 57999999-99999987986444----998088677757625 No 7 >3bbo_5 Ribosomal protein L35; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Probab=4.79 E-value=1.3e+02 Score=12.31 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=23.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 9999999999999999999988851022035688899 Q 537021.9.peg.1 7 QRIFSITLSHFAQWFLQFSVSLLLSADISASVLFPVY 43 (66) Q Consensus 7 qrifsitlshfaqwflqfsvslllsadisasvlfpvy 43 (66) ---|||++++|..-| .-+.++-.++.|+.|-+-|.| T Consensus 27 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~ 62 (159) T 3bbo_5 27 SAAQGISLTHFNKQL-KSTLNLSSSSSISSSKVQPIV 62 (159) T ss_dssp ------------------------------------- T ss_pred CCCCCEECCCCHHHH-HHHHHHHHHHHCCCCCCCCCC T ss_conf 533320316320667-767654333310146567764 No 8 >2co5_A Viral protein F93; viral protein/winged helix, winged helix, DNA-binding, HTH, WHTH, disulfide bond, STIV, archaea; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48 Probab=4.40 E-value=1.9e+02 Score=11.36 Aligned_cols=14 Identities=43% Similarity=0.807 Sum_probs=11.1 Q ss_pred HHCCCHHHHHHHHH Q ss_conf 51022035688899 Q 537021.9.peg.1 30 LSADISASVLFPVY 43 (66) Q Consensus 30 lsadisasvlfpvy 43 (66) ...|||..||+|.. T Consensus 38 fdidisdgvlypli 51 (99) T 2co5_A 38 FDIDISDGVLYPLI 51 (99) T ss_dssp HCCBCCHHHHHHHH T ss_pred CCCCCCCCEEHHHH T ss_conf 17774367614568 No 9 >1znp_A Hypothetical protein ATU3615; X-RAY, NESG, ATR55, Q8U9W0, structural genomics, PSI, protein structure initiative; 2.50A {Agrobacterium tumefaciens str} SCOP: b.82.1.16 Probab=4.10 E-value=1.6e+02 Score=11.78 Aligned_cols=6 Identities=67% Similarity=1.536 Sum_probs=0.0 Q ss_pred CCCCHH Q ss_conf 670489 Q 537021.9.peg.1 47 PGFDFR 52 (66) Q Consensus 47 pgfdfr 52 (66) |||||+ T Consensus 126 PGF~f~ 131 (154) T 1znp_A 126 PGFAFS 131 (154) T ss_dssp SCCCGG T ss_pred CCCCCC T ss_conf 989677 No 10 >1xe7_A YML079WP, hypothetical 22.5 kDa protein in TUB1-CPR3 intergenic region; jelly roll motif, cupin superfamily, structural genomics; HET: GUN; 1.75A {Saccharomyces cerevisiae} SCOP: b.82.1.16 PDB: 1xe8_A* Probab=3.98 E-value=1.7e+02 Score=11.69 Aligned_cols=6 Identities=83% Similarity=1.846 Sum_probs=0.0 Q ss_pred CCCCHH Q ss_conf 670489 Q 537021.9.peg.1 47 PGFDFR 52 (66) Q Consensus 47 pgfdfr 52 (66) |||||+ T Consensus 169 PGFdf~ 174 (203) T 1xe7_A 169 PGFDFE 174 (203) T ss_dssp SCCCGG T ss_pred CCCCHH T ss_conf 881566 Done!