RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.109_1
         (66 letters)



>gnl|CDD|33099 COG3290, CitA, Signal transduction histidine kinase regulating
           citrate/malate metabolism [Signal transduction
           mechanisms].
          Length = 537

 Score = 26.0 bits (57), Expect = 2.2
 Identities = 13/55 (23%), Positives = 19/55 (34%)

Query: 12  ITLSHFAQWFLQFSVSLLLSADISASVLFPVYWILPGFDFRKILSLRDYILCRLA 66
             LS      L+F   L L   +   +     WIL     R++L L    +  L 
Sbjct: 160 YLLSEIDDVILEFLRPLALIVVLGLLIGLLGAWILARHIKRQMLGLEPEEIATLL 214


>gnl|CDD|37526 KOG2315, KOG2315, KOG2315, Predicted translation initiation factor
           related to eIF-3a [Translation, ribosomal structure and
           biogenesis].
          Length = 566

 Score = 24.9 bits (54), Expect = 4.4
 Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 10  FSITLSHFAQWFLQFSVSLLLSADISASVLFPVYWILPGFDF 51
             I       W  QFS+   L+A + ++ +   ++ L  F  
Sbjct: 119 SQIQKKMQNGWVPQFSIDESLAARLVSNEVQ--FYDLGSFKT 158


>gnl|CDD|37813 KOG2602, KOG2602, KOG2602, Predicted cell surface protein
           homologous to bacterial outer membrane proteins [General
           function prediction only].
          Length = 457

 Score = 24.6 bits (53), Expect = 6.7
 Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 1/41 (2%)

Query: 20  WFLQFSVSLLLSADISASVLFPVY-WILPGFDFRKILSLRD 59
              Q S     S D+  S   P +  +   F    I   +D
Sbjct: 150 LSGQVSYGCTRSTDMGLSFYKPRFHGLKTPFSSFSIFRTQD 190


>gnl|CDD|119357 cd02878, GH18_zymocin_alpha, Zymocin, alpha subunit.  Zymocin is a
           heterotrimeric enzyme that inhibits yeast cell cycle
           progression. The zymocin alpha subunit has a chitinase
           activity that is essential for holoenzyme action from
           the cell exterior while the gamma subunit contains the
           intracellular toxin responsible for G1 phase cell cycle
           arrest.  The zymocin alpha and beta subunits are thought
           to act from the cell's exterior by docking to the cell
           wall-associated chitin, thus mediating gamma-toxin
           translocation.  The alpha subunit has an eight-stranded
           TIM barrel fold similar to that of family 18 glycosyl
           hydrolases such as hevamine, chitolectin, and
           chitobiase..
          Length = 345

 Score = 24.2 bits (53), Expect = 7.3
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 21  FLQFSVSL--LLSADISASVLFPV-YWILPGFDFRKILSLRDYI 61
           +L+F   L   L +  S S+  P  YW L GF  + +    DYI
Sbjct: 137 YLEFLKLLKSKLPSGKSLSIAAPASYWYLKGFPIKDMAKYVDYI 180


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.339    0.147    0.479 

Gapped
Lambda     K      H
   0.267   0.0806    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 841,216
Number of extensions: 32949
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 22
Length of query: 66
Length of database: 6,263,737
Length adjustment: 37
Effective length of query: 29
Effective length of database: 5,464,204
Effective search space: 158461916
Effective search space used: 158461916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 51 (23.3 bits)