RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.109_1
         (66 letters)



>gnl|CDD|150299 pfam09586, YfhO, Bacterial membrane protein YfhO.  This protein is
           a conserved membrane protein. The yfhO gene is
           transcribed in Difco sporulation medium and the
           transcription is affected by the YvrGHb two-component
           system. Some members of this family have been annotated
           as glycosyl transferases of the PMT family.
          Length = 835

 Score = 30.7 bits (70), Expect = 0.091
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 5   FCQRIFSITLSHFAQWFLQFSVSLLLSADISASVLFPVYW 44
           F  R+    +    + FL+F +S LLS  ISA VL P   
Sbjct: 197 FLYRLIFKDIKSRWKQFLRFIISSLLSGGISAVVLLPTVL 236


>gnl|CDD|185101 PRK15179, PRK15179, Vi polysaccharide biosynthesis protein TviE;
           Provisional.
          Length = 694

 Score = 24.2 bits (52), Expect = 8.7
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)

Query: 7   QRIFSITLS-HFAQWFLQFSVSLLLS 31
           +RI    LS     W  QF+  LLLS
Sbjct: 574 ERILFTGLSRRVGYWLTQFNAFLLLS 599


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.339    0.147    0.479 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,053,540
Number of extensions: 48529
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 10
Length of query: 66
Length of database: 5,994,473
Length adjustment: 37
Effective length of query: 29
Effective length of database: 5,194,977
Effective search space: 150654333
Effective search space used: 150654333
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 50 (23.2 bits)