RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.109_1 (66 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 32.2 bits (73), Expect = 0.029 Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 28/82 (34%) Query: 5 FCQRIFSITLSHFAQWFLQFSV----SLLLSA------D-------ISASVL-FPVYWIL 46 F +R + FL + LL+ A D +A + PVY Sbjct: 409 FSERKLKFSNR-----FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463 Query: 47 PGFDFRK----IL-SLRDYILC 63 G D R I + D I+ Sbjct: 464 DGSDLRVLSGSISERIVDCIIR 485 Score = 27.2 bits (60), Expect = 0.82 Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 31/72 (43%) Query: 5 FCQRIFSITLSHFAQWFLQF-----SVSLLLSADISASVLFPV--------Y----WIL- 46 + +I +W L+ LLS IS P+ Y +L Sbjct: 208 VFTQGLNIL-----EW-LENPSNTPDKDYLLSIPIS----CPLIGVIQLAHYVVTAKLLG 257 Query: 47 --PGFDFRKILS 56 PG + R L Sbjct: 258 FTPG-ELRSYLK 268 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 31.1 bits (69), Expect = 0.052 Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 2/18 (11%) Query: 22 LQFSVSLLLSADISASVL 39 LQ SL L AD SA L Sbjct: 25 LQ--ASLKLYADDSAPAL 40 >2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D Length = 1524 Score = 25.1 bits (54), Expect = 3.4 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 4 LFCQRIF 10 LF +RIF Sbjct: 44 LFDERIF 50 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.339 0.147 0.479 Gapped Lambda K H 0.267 0.0582 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 571,297 Number of extensions: 18140 Number of successful extensions: 56 Number of sequences better than 10.0: 1 Number of HSP's gapped: 56 Number of HSP's successfully gapped: 4 Length of query: 66 Length of database: 5,693,230 Length adjustment: 37 Effective length of query: 29 Effective length of database: 4,796,202 Effective search space: 139089858 Effective search space used: 139089858 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.8 bits) S2: 50 (23.4 bits)