RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.109_1
         (66 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.2 bits (73), Expect = 0.029
 Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 28/82 (34%)

Query: 5   FCQRIFSITLSHFAQWFLQFSV----SLLLSA------D-------ISASVL-FPVYWIL 46
           F +R    +       FL  +      LL+ A      D        +A  +  PVY   
Sbjct: 409 FSERKLKFSNR-----FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463

Query: 47  PGFDFRK----IL-SLRDYILC 63
            G D R     I   + D I+ 
Sbjct: 464 DGSDLRVLSGSISERIVDCIIR 485



 Score = 27.2 bits (60), Expect = 0.82
 Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 31/72 (43%)

Query: 5   FCQRIFSITLSHFAQWFLQF-----SVSLLLSADISASVLFPV--------Y----WIL- 46
              +  +I      +W L+          LLS  IS     P+        Y     +L 
Sbjct: 208 VFTQGLNIL-----EW-LENPSNTPDKDYLLSIPIS----CPLIGVIQLAHYVVTAKLLG 257

Query: 47  --PGFDFRKILS 56
             PG + R  L 
Sbjct: 258 FTPG-ELRSYLK 268


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.1 bits (69), Expect = 0.052
 Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 2/18 (11%)

Query: 22 LQFSVSLLLSADISASVL 39
          LQ   SL L AD SA  L
Sbjct: 25 LQ--ASLKLYADDSAPAL 40


>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase
          holoenzyme, streptolydigin, antibiotic, transcription
          regulation; HET: STD; 2.40A {Thermus thermophilus}
          SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D*
          2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D*
          3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
          Length = 1524

 Score = 25.1 bits (54), Expect = 3.4
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 4  LFCQRIF 10
          LF +RIF
Sbjct: 44 LFDERIF 50


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.339    0.147    0.479 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 571,297
Number of extensions: 18140
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 4
Length of query: 66
Length of database: 5,693,230
Length adjustment: 37
Effective length of query: 29
Effective length of database: 4,796,202
Effective search space: 139089858
Effective search space used: 139089858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 50 (23.4 bits)