RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.109_1 (66 letters) >d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus [TaxId: 274]} Length = 1504 Score = 25.1 bits (54), Expect = 1.8 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 4 LFCQRIF 10 LF +RIF Sbjct: 43 LFDERIF 49 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.339 0.147 0.479 Gapped Lambda K H 0.267 0.0494 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 253,370 Number of extensions: 8162 Number of successful extensions: 16 Number of sequences better than 10.0: 1 Number of HSP's gapped: 16 Number of HSP's successfully gapped: 1 Length of query: 66 Length of database: 2,407,596 Length adjustment: 35 Effective length of query: 31 Effective length of database: 1,927,046 Effective search space: 59738426 Effective search space used: 59738426 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.8 bits) S2: 47 (22.4 bits)