RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.1090_1
         (38 letters)



>gnl|CDD|178063 PLN02444, PLN02444, HMP-P synthase.
          Length = 642

 Score = 27.2 bits (60), Expect = 0.86
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 6/27 (22%)

Query: 4   AMCDPLFCLILYFLLLKICENVRKIVK 30
           +MC P FC       +KI E+VRK  +
Sbjct: 569 SMCGPKFC------SMKITEDVRKYAE 589


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.347    0.157    0.494 

Gapped
Lambda     K      H
   0.267   0.0753    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 547,185
Number of extensions: 16377
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 3
Length of query: 38
Length of database: 5,994,473
Length adjustment: 12
Effective length of query: 26
Effective length of database: 5,735,177
Effective search space: 149114602
Effective search space used: 149114602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 50 (23.0 bits)