Query 537021.9.peg.1096_1 Match_columns 53 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 08:23:18 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1096.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2yxl_A PH0851 protein, 450AA 18.0 85 0.0025 14.6 3.2 23 25-47 54-76 (143) 2 >3l22_A SUSD superfamily prote 11.0 81 0.0024 14.7 0.6 19 3-26 4-22 (91) 3 >1ezj_A Nucleocapsid phosphopr 7.6 1.9E+02 0.0057 12.8 2.3 22 19-40 42-63 (115) 4 >2waq_G DNA-directed RNA polym 6.0 1.4E+02 0.004 13.6 0.0 14 18-31 115-128 (132) 5 >1n93_X P40 nucleoprotein; RNA 5.7 2.5E+02 0.0073 12.3 1.6 14 28-41 15-28 (110) 6 >2cx0_A Hypothetical protein A 4.6 1.2E+02 0.0035 13.9 -1.1 16 1-16 27-42 (104) 7 >1co6_A Protein (cytochrome C2 4.6 28 0.00083 17.0 -4.3 16 26-41 8-24 (43) 8 >2rft_A Influenza B hemaggluti 3.9 2.4E+02 0.007 12.4 0.0 12 1-12 31-42 (54) 9 >2ab9_A Pro-SFTI-1; protein, b 3.6 1.7E+02 0.005 13.1 -1.0 8 44-51 20-27 (31) 10 >2c5u_A RNA ligase, T4 RNA lig 3.5 2.8E+02 0.0082 12.1 0.1 23 2-24 15-41 (75) No 1 >>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii OT3} (A:1-143) Probab=17.99 E-value=85 Score=14.60 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=19.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 58999999999999989998776 Q 537021.9.peg.1 25 DHIFYCCMIFIGVIDGVVRSISS 47 (53) Q Consensus 25 dhifyccmifigvidgvvrsiss 47 (53) .-|||--|--.|+||-+++.+-. T Consensus 54 T~I~Y~i~k~~GllDkiI~divG 76 (143) T 2yxl_A 54 TMIFYDIMKKQGLIDKVIKEIVG 76 (143) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999889999999998718 No 2 >>3l22_A SUSD superfamily protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.05A {Bacteroides fragilis} (A:237-327) Probab=11.00 E-value=81 Score=14.70 Aligned_cols=19 Identities=53% Similarity=0.822 Sum_probs=12.7 Q ss_pred CCCCCCCHHHCCHHHEEEHHHHHH Q ss_conf 567754432226123232013558 Q 537021.9.peg.1 3 RKKPYYSADKISESRIFSLKYADH 26 (53) Q Consensus 3 rkkpyysadkisesrifslkyadh 26 (53) -|.|||+. ..||||..+|. T Consensus 4 ~kapy~t~-----etifslpm~~t 22 (91) T 3l22_A 4 YKAPYFSQ-----ESIFSLPXADT 22 (91) T ss_dssp GSTTSCCT-----TEEEEECCCTT T ss_pred HCCCCCCC-----CEEEEEECCCC T ss_conf 34567995-----14798751578 No 3 >>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, tetramer, viral protein, transferase; 1.90A {Sendai virus} (A:) Probab=7.57 E-value=1.9e+02 Score=12.84 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=17.0 Q ss_pred EEHHHHHHHHHHHHHHHHHHHH Q ss_conf 3201355899999999999998 Q 537021.9.peg.1 19 FSLKYADHIFYCCMIFIGVIDG 40 (53) Q Consensus 19 fslkyadhifyccmifigvidg 40 (53) -+..||..+|.-|-..|||--. T Consensus 42 ~~a~~a~~~~~l~Gl~i~v~~~ 63 (115) T 1ezj_A 42 KSANYAEMTFNVCGLILSAEKS 63 (115) T ss_dssp TCCSHHHHHHHHHHHHHHHHHH T ss_pred HCCCHHHHHHHHHHHHHHHHHC T ss_conf 3235899999999999853440 No 4 >>2waq_G DNA-directed RNA polymerase RPO8 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_G 3hkz_G (G:) Probab=6.03 E-value=1.4e+02 Score=13.58 Aligned_cols=14 Identities=43% Similarity=1.034 Sum_probs=10.4 Q ss_pred EEEHHHHHHHHHHH Q ss_conf 23201355899999 Q 537021.9.peg.1 18 IFSLKYADHIFYCC 31 (53) Q Consensus 18 ifslkyadhifycc 31 (53) .-.|+--||++||. T Consensus 115 ~~~ln~MDHVYfCV 128 (132) T 2waq_G 115 IHQLNVMDHIYFCV 128 (132) T ss_dssp EBC----------- T ss_pred CCCCCCCCEEEEEE T ss_conf 35531003599999 No 5 >>1n93_X P40 nucleoprotein; RNA virus nucleoprotein tetramer, viral protein; 1.76A {Borna disease virus} (X:129-238) Probab=5.73 E-value=2.5e+02 Score=12.32 Aligned_cols=14 Identities=43% Similarity=0.959 Sum_probs=10.9 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999989 Q 537021.9.peg.1 28 FYCCMIFIGVIDGV 41 (53) Q Consensus 28 fyccmifigvidgv 41 (53) --||-..|||.-|- T Consensus 15 ~HCC~LLIGv~~gS 28 (110) T 1n93_X 15 SHCCSLLIGVVIGS 28 (110) T ss_dssp HHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHCCC T ss_conf 99888887542066 No 6 >>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.80A {Aeropyrum pernix K1} (A:1-89,A:173-187) Probab=4.57 E-value=1.2e+02 Score=13.91 Aligned_cols=16 Identities=50% Similarity=0.814 Sum_probs=10.4 Q ss_pred CCCCCCCCCHHHCCHH Q ss_conf 9856775443222612 Q 537021.9.peg.1 1 LDRKKPYYSADKISES 16 (53) Q Consensus 1 ldrkkpyysadkises 16 (53) |.|-||||..-..||. T Consensus 27 lerlkpyytripfsek 42 (104) T 2cx0_A 27 LERLKPYYTRIPFSEK 42 (104) T ss_dssp HHHHTTTSSSCCSCTT T ss_pred HHHHHHHCCCCCCCCC T ss_conf 9999987465777743 No 7 >>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET: HEM; 1.60A {Rhodopseudomonas viridis} (A:1-13,A:78-107) Probab=4.55 E-value=28 Score=16.97 Aligned_cols=16 Identities=50% Similarity=0.897 Sum_probs=10.5 Q ss_pred HHH-HHHHHHHHHHHHH Q ss_conf 899-9999999999989 Q 537021.9.peg.1 26 HIF-YCCMIFIGVIDGV 41 (53) Q Consensus 26 hif-yccmifigvidgv 41 (53) ..| -|-|||.||-|.- T Consensus 8 qvfkqckmifagvkdeq 24 (43) T 1co6_A 8 QVFKQCKMIFAGVKDEQ 24 (43) T ss_dssp HHHHHHSCCCCCCCCHH T ss_pred HHHHHCCCCCCCCCCHH T ss_conf 99985677888999999 No 8 >>2rft_A Influenza B hemagglutinin (HA); viral protein, receptor specificity, envelope protein, fusion protein, membrane, transmembrane, virion; HET: NAG SIA BGC GAL NDG; 2.80A {Influenza b virus} PDB: 2rfu_A* 3bt6_A* (A:32-46,A:285-323) Probab=3.93 E-value=2.4e+02 Score=12.41 Aligned_cols=12 Identities=42% Similarity=1.129 Sum_probs=7.6 Q ss_pred CCCCCCCCCHHH Q ss_conf 985677544322 Q 537021.9.peg.1 1 LDRKKPYYSADK 12 (53) Q Consensus 1 ldrkkpyysadk 12 (53) |...||||.... T Consensus 31 lnkskpyytgeh 42 (54) T 2rft_A 31 LNKSKPYYTGEH 42 (54) T ss_dssp ECCCSSEECSCC T ss_pred CCCCCCCCCCCC T ss_conf 668887431568 No 9 >>2ab9_A Pro-SFTI-1; protein, beta-sheet, random coil, hydrolase inhibitor; NMR {Helianthus annuus} (A:) Probab=3.60 E-value=1.7e+02 Score=13.13 Aligned_cols=8 Identities=63% Similarity=1.493 Sum_probs=0.0 Q ss_pred HHHHHHCC Q ss_conf 87763123 Q 537021.9.peg.1 44 SISSLCFP 51 (53) Q Consensus 44 sisslcfp 51 (53) ||...||| T Consensus 20 sippicfp 27 (31) T 2ab9_A 20 SIPPICFP 27 (31) T ss_dssp SSSCSSSS T ss_pred CCCCCCCC T ss_conf 67970568 No 10 >>2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding; HET: APC; 2.21A {Bacteriophage T4} (A:1-75) Probab=3.53 E-value=2.8e+02 Score=12.07 Aligned_cols=23 Identities=43% Similarity=0.856 Sum_probs=0.0 Q ss_pred CCCCCCCCHHHCCHH----HEEEHHHH Q ss_conf 856775443222612----32320135 Q 537021.9.peg.1 2 DRKKPYYSADKISES----RIFSLKYA 24 (53) Q Consensus 2 drkkpyysadkises----rifslkya 24 (53) |..+.+|-+|.++.. ||||..+| T Consensus 15 ~s~~~Fff~D~vt~mgt~~RIFsY~~A 41 (75) T 2c5u_A 15 DSQRKFFYSDDVSASGRTYRIFSYNYA 41 (75) T ss_dssp SCTTSEEEEEEECTTCCEEEEEEESCC T ss_pred CCCCCEEEEEEEECCCCEEEEEECCCC T ss_conf 151326876678615872678862554 Done!