Query 537021.9.peg.1096_1
Match_columns 53
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed May 25 07:58:23 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1096.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1n93x_ a.206.1.1 (X:) P40 nuc 22.0 23 0.0016 15.5 2.1 17 25-41 107-124 (343)
2 d2cx1a2 d.17.6.4 (A:1-90) Hypo 4.7 41 0.003 14.2 -1.4 17 1-17 26-42 (90)
3 d2j0141 d.325.1.2 (4:1-50) Rib 1.9 1.8E+02 0.013 11.1 -0.5 10 44-53 34-43 (50)
4 d2v89a1 g.50.1.2 (A:1414-1487) 1.9 2.5E+02 0.018 10.4 0.5 20 4-23 17-36 (74)
5 d1iufa1 a.4.1.7 (A:-2-75) Ars- 1.8 2.2E+02 0.016 10.6 -0.3 11 14-24 52-62 (78)
6 d1x61a2 g.39.1.3 (A:35-66) Thy 1.7 2.8E+02 0.02 10.1 0.1 11 3-13 10-20 (32)
7 d1gpma3 d.52.2.1 (A:405-525) G 1.6 2.8E+02 0.02 10.1 0.3 18 12-29 11-28 (121)
8 d2e9xc2 d.344.1.4 (C:1001-1087 1.4 3.1E+02 0.023 9.9 1.0 14 1-14 13-26 (87)
9 d1vs6z1 d.325.1.2 (Z:1-70) Rib 1.4 2.6E+02 0.019 10.3 -0.4 9 45-53 36-44 (70)
10 d4sgbi_ g.69.1.1 (I:) Plant ch 1.4 3.3E+02 0.024 9.8 0.0 5 7-11 15-19 (51)
No 1
>d1n93x_ a.206.1.1 (X:) P40 nucleoprotein {Borna disease virus [TaxId: 12455]}
Probab=22.03 E-value=23 Score=15.50 Aligned_cols=17 Identities=47% Similarity=1.065 Sum_probs=12.8
Q ss_pred HHHH-HHHHHHHHHHHHH
Q ss_conf 5899-9999999999989
Q 537021.9.peg.1 25 DHIF-YCCMIFIGVIDGV 41 (53)
Q Consensus 25 dhif-yccmifigvidgv 41 (53)
--|| +||-..|||.-|-
T Consensus 107 sSil~hCCdLLIGi~igS 124 (343)
T d1n93x_ 107 SSIFSHCCSLLIGVVIGS 124 (343)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHCCC
T ss_conf 999999888887542066
No 2
>d2cx1a2 d.17.6.4 (A:1-90) Hypothetical protein APE0525, N-terminal domain {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=4.71 E-value=41 Score=14.22 Aligned_cols=17 Identities=47% Similarity=0.755 Sum_probs=11.1
Q ss_pred CCCCCCCCCHHHCCHHH
Q ss_conf 98567754432226123
Q 537021.9.peg.1 1 LDRKKPYYSADKISESR 17 (53)
Q Consensus 1 ldrkkpyysadkisesr 17 (53)
|.|-||||..-..||..
T Consensus 26 lerlkpyytripfseka 42 (90)
T d2cx1a2 26 LERLKPYYTRIPFSEKA 42 (90)
T ss_dssp HHHHGGGSSSCCSCTTS
T ss_pred HHHCCCCEECCCCCCCC
T ss_conf 98706432026765201
No 3
>d2j0141 d.325.1.2 (4:1-50) Ribosomal protein L31p {Thermus thermophilus [TaxId: 274]}
Probab=1.91 E-value=1.8e+02 Score=11.08 Aligned_cols=10 Identities=30% Similarity=1.089 Sum_probs=5.3
Q ss_pred HHHHHHCCCC
Q ss_conf 8776312359
Q 537021.9.peg.1 44 SISSLCFPYF 53 (53)
Q Consensus 44 sisslcfpyf 53 (53)
.|+|-|-|+|
T Consensus 34 dIcs~cHPFy 43 (50)
T d2j0141 34 EVCSKCHPFY 43 (50)
T ss_dssp CSCCCCCSSS
T ss_pred EECCCCCCCC
T ss_conf 8899997869
No 4
>d2v89a1 g.50.1.2 (A:1414-1487) V(D)J recombination-activating protein 2, Rag2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.89 E-value=2.5e+02 Score=10.37 Aligned_cols=20 Identities=20% Similarity=0.311 Sum_probs=13.4
Q ss_pred CCCCCCHHHCCHHHEEEHHH
Q ss_conf 67754432226123232013
Q 537021.9.peg.1 4 KKPYYSADKISESRIFSLKY 23 (53)
Q Consensus 4 kkpyysadkisesrifslky 23 (53)
-.||||..--...-||--+-
T Consensus 17 W~P~YsTEl~kPamIfCs~g 36 (74)
T d2v89a1 17 WVPFYSTELNKPAMIYCSHG 36 (74)
T ss_dssp CCCCSTTCSSSCCEEEECST
T ss_pred CCCCCCCCCCCCEEEEEECC
T ss_conf 30032031388448999789
No 5
>d1iufa1 a.4.1.7 (A:-2-75) Ars-binding protein 1, ABP1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=1.77 E-value=2.2e+02 Score=10.65 Aligned_cols=11 Identities=55% Similarity=0.673 Sum_probs=7.3
Q ss_pred CHHHEEEHHHH
Q ss_conf 61232320135
Q 537021.9.peg.1 14 SESRIFSLKYA 24 (53)
Q Consensus 14 sesrifslkya 24 (53)
+-|+|.|-||+
T Consensus 52 sVS~iLS~ky~ 62 (78)
T d1iufa1 52 SVSQILSSKYS 62 (78)
T ss_dssp STTHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99888626788
No 6
>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.65 E-value=2.8e+02 Score=10.14 Aligned_cols=11 Identities=18% Similarity=0.640 Sum_probs=7.4
Q ss_pred CCCCCCCHHHC
Q ss_conf 56775443222
Q 537021.9.peg.1 3 RKKPYYSADKI 13 (53)
Q Consensus 3 rkkpyysadki 13 (53)
|..|+|..+|-
T Consensus 10 RGqpFYAvekk 20 (32)
T d1x61a2 10 RGQHFYAVERR 20 (32)
T ss_dssp TTSCEEESSSC
T ss_pred CCCCCEEEECC
T ss_conf 58803586211
No 7
>d1gpma3 d.52.2.1 (A:405-525) GMP synthetase C-terminal dimerisation domain {Escherichia coli [TaxId: 562]}
Probab=1.63 E-value=2.8e+02 Score=10.11 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=11.2
Q ss_pred HCCHHHEEEHHHHHHHHH
Q ss_conf 226123232013558999
Q 537021.9.peg.1 12 KISESRIFSLKYADHIFY 29 (53)
Q Consensus 12 kisesrifslkyadhify 29 (53)
++.+.|+--|+-||+|+-
T Consensus 11 evT~ekl~ilReAD~Iv~ 28 (121)
T d1gpma3 11 EVKKEYCDLLRRADAIFI 28 (121)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCHHHH
T ss_conf 679999999997779999
No 8
>d2e9xc2 d.344.1.4 (C:1001-1087) GINS complex subunit 3, PSF3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.44 E-value=3.1e+02 Score=9.85 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=9.4
Q ss_pred CCCCCCCCCHHHCC
Q ss_conf 98567754432226
Q 537021.9.peg.1 1 LDRKKPYYSADKIS 14 (53)
Q Consensus 1 ldrkkpyysadkis 14 (53)
++..+-||+-|.|-
T Consensus 13 ~~m~~nYydIDDIL 26 (87)
T d2e9xc2 13 LGPEENFLSLDDIL 26 (87)
T ss_dssp TSSSCCTTCHHHHH
T ss_pred CCCCCCCCCHHHHH
T ss_conf 46323506899986
No 9
>d1vs6z1 d.325.1.2 (Z:1-70) Ribosomal protein L31p {Escherichia coli [TaxId: 562]}
Probab=1.44 E-value=2.6e+02 Score=10.25 Aligned_cols=9 Identities=44% Similarity=1.272 Sum_probs=0.0
Q ss_pred HHHHHCCCC
Q ss_conf 776312359
Q 537021.9.peg.1 45 ISSLCFPYF 53 (53)
Q Consensus 45 isslcfpyf 53 (53)
|+|-|-|+|
T Consensus 36 i~s~~HPfy 44 (70)
T d1vs6z1 36 VCSKCHPFF 44 (70)
T ss_dssp CCSSSCCBC
T ss_pred ECCCCCCCC
T ss_conf 578888759
No 10
>d4sgbi_ g.69.1.1 (I:) Plant chymotrypsin inhibitor {Potato tuber (Solanum tuberosum) [TaxId: 4113]}
Probab=1.40 E-value=3.3e+02 Score=9.77 Aligned_cols=5 Identities=80% Similarity=1.491 Sum_probs=0.0
Q ss_pred CCCHH
Q ss_conf 54432
Q 537021.9.peg.1 7 YYSAD 11 (53)
Q Consensus 7 yysad 11 (53)
|||+|
T Consensus 15 Yfs~d 19 (51)
T d4sgbi_ 15 YYSAN 19 (51)
T ss_dssp EECTT
T ss_pred EECCC
T ss_conf 47688
Done!