Query 537021.9.peg.1096_1 Match_columns 53 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed May 25 07:58:23 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1096.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1n93x_ a.206.1.1 (X:) P40 nuc 22.0 23 0.0016 15.5 2.1 17 25-41 107-124 (343) 2 d2cx1a2 d.17.6.4 (A:1-90) Hypo 4.7 41 0.003 14.2 -1.4 17 1-17 26-42 (90) 3 d2j0141 d.325.1.2 (4:1-50) Rib 1.9 1.8E+02 0.013 11.1 -0.5 10 44-53 34-43 (50) 4 d2v89a1 g.50.1.2 (A:1414-1487) 1.9 2.5E+02 0.018 10.4 0.5 20 4-23 17-36 (74) 5 d1iufa1 a.4.1.7 (A:-2-75) Ars- 1.8 2.2E+02 0.016 10.6 -0.3 11 14-24 52-62 (78) 6 d1x61a2 g.39.1.3 (A:35-66) Thy 1.7 2.8E+02 0.02 10.1 0.1 11 3-13 10-20 (32) 7 d1gpma3 d.52.2.1 (A:405-525) G 1.6 2.8E+02 0.02 10.1 0.3 18 12-29 11-28 (121) 8 d2e9xc2 d.344.1.4 (C:1001-1087 1.4 3.1E+02 0.023 9.9 1.0 14 1-14 13-26 (87) 9 d1vs6z1 d.325.1.2 (Z:1-70) Rib 1.4 2.6E+02 0.019 10.3 -0.4 9 45-53 36-44 (70) 10 d4sgbi_ g.69.1.1 (I:) Plant ch 1.4 3.3E+02 0.024 9.8 0.0 5 7-11 15-19 (51) No 1 >d1n93x_ a.206.1.1 (X:) P40 nucleoprotein {Borna disease virus [TaxId: 12455]} Probab=22.03 E-value=23 Score=15.50 Aligned_cols=17 Identities=47% Similarity=1.065 Sum_probs=12.8 Q ss_pred HHHH-HHHHHHHHHHHHH Q ss_conf 5899-9999999999989 Q 537021.9.peg.1 25 DHIF-YCCMIFIGVIDGV 41 (53) Q Consensus 25 dhif-yccmifigvidgv 41 (53) --|| +||-..|||.-|- T Consensus 107 sSil~hCCdLLIGi~igS 124 (343) T d1n93x_ 107 SSIFSHCCSLLIGVVIGS 124 (343) T ss_dssp HHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHCCC T ss_conf 999999888887542066 No 2 >d2cx1a2 d.17.6.4 (A:1-90) Hypothetical protein APE0525, N-terminal domain {Archaeon Aeropyrum pernix [TaxId: 56636]} Probab=4.71 E-value=41 Score=14.22 Aligned_cols=17 Identities=47% Similarity=0.755 Sum_probs=11.1 Q ss_pred CCCCCCCCCHHHCCHHH Q ss_conf 98567754432226123 Q 537021.9.peg.1 1 LDRKKPYYSADKISESR 17 (53) Q Consensus 1 ldrkkpyysadkisesr 17 (53) |.|-||||..-..||.. T Consensus 26 lerlkpyytripfseka 42 (90) T d2cx1a2 26 LERLKPYYTRIPFSEKA 42 (90) T ss_dssp HHHHGGGSSSCCSCTTS T ss_pred HHHCCCCEECCCCCCCC T ss_conf 98706432026765201 No 3 >d2j0141 d.325.1.2 (4:1-50) Ribosomal protein L31p {Thermus thermophilus [TaxId: 274]} Probab=1.91 E-value=1.8e+02 Score=11.08 Aligned_cols=10 Identities=30% Similarity=1.089 Sum_probs=5.3 Q ss_pred HHHHHHCCCC Q ss_conf 8776312359 Q 537021.9.peg.1 44 SISSLCFPYF 53 (53) Q Consensus 44 sisslcfpyf 53 (53) .|+|-|-|+| T Consensus 34 dIcs~cHPFy 43 (50) T d2j0141 34 EVCSKCHPFY 43 (50) T ss_dssp CSCCCCCSSS T ss_pred EECCCCCCCC T ss_conf 8899997869 No 4 >d2v89a1 g.50.1.2 (A:1414-1487) V(D)J recombination-activating protein 2, Rag2 {Mouse (Mus musculus) [TaxId: 10090]} Probab=1.89 E-value=2.5e+02 Score=10.37 Aligned_cols=20 Identities=20% Similarity=0.311 Sum_probs=13.4 Q ss_pred CCCCCCHHHCCHHHEEEHHH Q ss_conf 67754432226123232013 Q 537021.9.peg.1 4 KKPYYSADKISESRIFSLKY 23 (53) Q Consensus 4 kkpyysadkisesrifslky 23 (53) -.||||..--...-||--+- T Consensus 17 W~P~YsTEl~kPamIfCs~g 36 (74) T d2v89a1 17 WVPFYSTELNKPAMIYCSHG 36 (74) T ss_dssp CCCCSTTCSSSCCEEEECST T ss_pred CCCCCCCCCCCCEEEEEECC T ss_conf 30032031388448999789 No 5 >d1iufa1 a.4.1.7 (A:-2-75) Ars-binding protein 1, ABP1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Probab=1.77 E-value=2.2e+02 Score=10.65 Aligned_cols=11 Identities=55% Similarity=0.673 Sum_probs=7.3 Q ss_pred CHHHEEEHHHH Q ss_conf 61232320135 Q 537021.9.peg.1 14 SESRIFSLKYA 24 (53) Q Consensus 14 sesrifslkya 24 (53) +-|+|.|-||+ T Consensus 52 sVS~iLS~ky~ 62 (78) T d1iufa1 52 SVSQILSSKYS 62 (78) T ss_dssp STTHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99888626788 No 6 >d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]} Probab=1.65 E-value=2.8e+02 Score=10.14 Aligned_cols=11 Identities=18% Similarity=0.640 Sum_probs=7.4 Q ss_pred CCCCCCCHHHC Q ss_conf 56775443222 Q 537021.9.peg.1 3 RKKPYYSADKI 13 (53) Q Consensus 3 rkkpyysadki 13 (53) |..|+|..+|- T Consensus 10 RGqpFYAvekk 20 (32) T d1x61a2 10 RGQHFYAVERR 20 (32) T ss_dssp TTSCEEESSSC T ss_pred CCCCCEEEECC T ss_conf 58803586211 No 7 >d1gpma3 d.52.2.1 (A:405-525) GMP synthetase C-terminal dimerisation domain {Escherichia coli [TaxId: 562]} Probab=1.63 E-value=2.8e+02 Score=10.11 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=11.2 Q ss_pred HCCHHHEEEHHHHHHHHH Q ss_conf 226123232013558999 Q 537021.9.peg.1 12 KISESRIFSLKYADHIFY 29 (53) Q Consensus 12 kisesrifslkyadhify 29 (53) ++.+.|+--|+-||+|+- T Consensus 11 evT~ekl~ilReAD~Iv~ 28 (121) T d1gpma3 11 EVKKEYCDLLRRADAIFI 28 (121) T ss_dssp SCCHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHCCHHHH T ss_conf 679999999997779999 No 8 >d2e9xc2 d.344.1.4 (C:1001-1087) GINS complex subunit 3, PSF3 {Human (Homo sapiens) [TaxId: 9606]} Probab=1.44 E-value=3.1e+02 Score=9.85 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=9.4 Q ss_pred CCCCCCCCCHHHCC Q ss_conf 98567754432226 Q 537021.9.peg.1 1 LDRKKPYYSADKIS 14 (53) Q Consensus 1 ldrkkpyysadkis 14 (53) ++..+-||+-|.|- T Consensus 13 ~~m~~nYydIDDIL 26 (87) T d2e9xc2 13 LGPEENFLSLDDIL 26 (87) T ss_dssp TSSSCCTTCHHHHH T ss_pred CCCCCCCCCHHHHH T ss_conf 46323506899986 No 9 >d1vs6z1 d.325.1.2 (Z:1-70) Ribosomal protein L31p {Escherichia coli [TaxId: 562]} Probab=1.44 E-value=2.6e+02 Score=10.25 Aligned_cols=9 Identities=44% Similarity=1.272 Sum_probs=0.0 Q ss_pred HHHHHCCCC Q ss_conf 776312359 Q 537021.9.peg.1 45 ISSLCFPYF 53 (53) Q Consensus 45 isslcfpyf 53 (53) |+|-|-|+| T Consensus 36 i~s~~HPfy 44 (70) T d1vs6z1 36 VCSKCHPFF 44 (70) T ss_dssp CCSSSCCBC T ss_pred ECCCCCCCC T ss_conf 578888759 No 10 >d4sgbi_ g.69.1.1 (I:) Plant chymotrypsin inhibitor {Potato tuber (Solanum tuberosum) [TaxId: 4113]} Probab=1.40 E-value=3.3e+02 Score=9.77 Aligned_cols=5 Identities=80% Similarity=1.491 Sum_probs=0.0 Q ss_pred CCCHH Q ss_conf 54432 Q 537021.9.peg.1 7 YYSAD 11 (53) Q Consensus 7 yysad 11 (53) |||+| T Consensus 15 Yfs~d 19 (51) T d4sgbi_ 15 YYSAN 19 (51) T ss_dssp EECTT T ss_pred EECCC T ss_conf 47688 Done!