RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.1096_1
         (53 letters)



>3eeq_A Putative cobalamin biosynthesis protein G homolog; structural
          genomics, unknown function, PSI-2, protein structure
          initiative; 2.30A {Sulfolobus solfataricus} SCOP:
          c.151.1.1 c.152.1.1
          Length = 336

 Score = 24.9 bits (54), Expect = 4.2
 Identities = 4/21 (19%), Positives = 10/21 (47%)

Query: 29 YCCMIFIGVIDGVVRSISSLC 49
          Y  ++F+  ++G  R +    
Sbjct: 55 YDAIVFVMALEGATRIVCKYA 75


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.333    0.148    0.472 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 467,532
Number of extensions: 13825
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 3
Length of query: 53
Length of database: 5,693,230
Length adjustment: 25
Effective length of query: 28
Effective length of database: 5,087,130
Effective search space: 142439640
Effective search space used: 142439640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 50 (23.4 bits)