Query         537021.9.peg.1101_1
Match_columns 37
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed May 25 08:09:57 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_1101.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3cmu_A Protein RECA, recombin  16.0      75  0.0022   15.9   1.6   18    1-18     14-31  (69)
  2 >3cmu_A Protein RECA, recombin  14.5      87  0.0026   15.6   1.6   18    1-18     14-31  (71)
  3 >3cmu_A Protein RECA, recombin  14.5      87  0.0026   15.6   1.6   18    1-18     14-31  (71)
  4 >2zr9_A Protein RECA, recombin  14.4      88  0.0026   15.6   1.6   19    1-19     14-32  (78)
  5 >3cmw_A Protein RECA, recombin  13.7      87  0.0026   15.6   1.4   18    1-18     14-31  (71)
  6 >3cmw_A Protein RECA, recombin  13.7      87  0.0026   15.6   1.4   18    1-18     14-31  (71)
  7 >3cmw_A Protein RECA, recombin  13.7      87  0.0026   15.6   1.4   18    1-18     14-31  (71)
  8 >2zu2_A 3C-like proteinase; pr  13.5 1.2E+02  0.0036   14.9   2.1   26    5-30     26-51  (190)
  9 >3i26_A Hemagglutinin-esterase  12.8      76  0.0022   15.9   0.9   10    5-14     14-23  (132)
 10 >3cmu_A Protein RECA, recombin  12.4 1.1E+02  0.0032   15.1   1.6   18    1-18     14-31  (65)

No 1  
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1292-1360)
Probab=15.99  E-value=75  Score=15.90  Aligned_cols=18  Identities=22%  Similarity=0.420  Sum_probs=14.9

Q ss_pred             CCCCCCCEEEECCCEEEC
Q ss_conf             953222048964613201
Q 537021.9.peg.1    1 VLKKSLDWIYFGDEMIIP   18 (37)
Q Consensus         1 vlkksldwiyfgdemiip   18 (37)
                      +++||=-|.+|+++.|--
T Consensus        14 ii~KsGsWysy~ge~lGQ   31 (69)
T 3cmu_A           14 LIEKAGAWYSYKGEKIGQ   31 (69)
T ss_dssp             SSEEETTEEEETTEEEEE
T ss_pred             HHHHCCCEEEECCCCCCC
T ss_conf             222047327632636456


No 2  
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:943-1013)
Probab=14.47  E-value=87  Score=15.59  Aligned_cols=18  Identities=22%  Similarity=0.420  Sum_probs=15.0

Q ss_pred             CCCCCCCEEEECCCEEEC
Q ss_conf             953222048964613201
Q 537021.9.peg.1    1 VLKKSLDWIYFGDEMIIP   18 (37)
Q Consensus         1 vlkksldwiyfgdemiip   18 (37)
                      |++||=-|.+|+++.|--
T Consensus        14 iI~KsGsWysy~~~~lgQ   31 (71)
T 3cmu_A           14 LIEKAGAWYSYKGEKIGQ   31 (71)
T ss_dssp             SSEEETTEEEETTEEEEE
T ss_pred             EEECCCCEEEECCCEECC
T ss_conf             041378537623414056


No 3  
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:594-664)
Probab=14.47  E-value=87  Score=15.59  Aligned_cols=18  Identities=22%  Similarity=0.420  Sum_probs=15.0

Q ss_pred             CCCCCCCEEEECCCEEEC
Q ss_conf             953222048964613201
Q 537021.9.peg.1    1 VLKKSLDWIYFGDEMIIP   18 (37)
Q Consensus         1 vlkksldwiyfgdemiip   18 (37)
                      |++||=-|.+|+++.|--
T Consensus        14 iI~KsGsWysy~~~~lgQ   31 (71)
T 3cmu_A           14 LIEKAGAWYSYKGEKIGQ   31 (71)
T ss_dssp             SSEEETTEEEETTEEEEE
T ss_pred             EEEECCCCCCCCCCHHCC
T ss_conf             356425533002322115


No 4  
>>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, cytoplasm, DNA damage, DNA recombination; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... (A:272-349)
Probab=14.35  E-value=88  Score=15.57  Aligned_cols=19  Identities=21%  Similarity=0.429  Sum_probs=15.3

Q ss_pred             CCCCCCCEEEECCCEEECC
Q ss_conf             9532220489646132011
Q 537021.9.peg.1    1 VLKKSLDWIYFGDEMIIPK   19 (37)
Q Consensus         1 vlkksldwiyfgdemiipk   19 (37)
                      +++||=-|.+|+++.|-.-
T Consensus        14 iI~KsGsWysy~g~~lGQG   32 (78)
T 2zr9_A           14 FIRKSGSWFTYEGEQLGQG   32 (78)
T ss_dssp             SSEEETTEEEETTEEEEES
T ss_pred             CEEEEEEEEEECCEEHHHH
T ss_conf             4661223598899670565


No 5  
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:943-1013)
Probab=13.66  E-value=87  Score=15.59  Aligned_cols=18  Identities=22%  Similarity=0.420  Sum_probs=14.8

Q ss_pred             CCCCCCCEEEECCCEEEC
Q ss_conf             953222048964613201
Q 537021.9.peg.1    1 VLKKSLDWIYFGDEMIIP   18 (37)
Q Consensus         1 vlkksldwiyfgdemiip   18 (37)
                      |++||=-|.+|+++.|--
T Consensus        14 iI~KsGsWysy~~~~lgQ   31 (71)
T 3cmw_A           14 LIEKAGAWYSYKGEKIGQ   31 (71)
T ss_dssp             SEEEETTEEEETTEEEEE
T ss_pred             HHHHCCCCEEECCCHHCC
T ss_conf             243237414415622123


No 6  
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:594-664)
Probab=13.66  E-value=87  Score=15.59  Aligned_cols=18  Identities=22%  Similarity=0.420  Sum_probs=14.8

Q ss_pred             CCCCCCCEEEECCCEEEC
Q ss_conf             953222048964613201
Q 537021.9.peg.1    1 VLKKSLDWIYFGDEMIIP   18 (37)
Q Consensus         1 vlkksldwiyfgdemiip   18 (37)
                      |++||=-|.+|+++.|--
T Consensus        14 iI~KsGsWysy~~~~lgQ   31 (71)
T 3cmw_A           14 LIEKAGAWYSYKGEKIGQ   31 (71)
T ss_dssp             SEEEETTEEEETTEEEEE
T ss_pred             EEECCCCCCCCCCCEECC
T ss_conf             274388622246735147


No 7  
>>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:245-315)
Probab=13.66  E-value=87  Score=15.59  Aligned_cols=18  Identities=22%  Similarity=0.420  Sum_probs=14.8

Q ss_pred             CCCCCCCEEEECCCEEEC
Q ss_conf             953222048964613201
Q 537021.9.peg.1    1 VLKKSLDWIYFGDEMIIP   18 (37)
Q Consensus         1 vlkksldwiyfgdemiip   18 (37)
                      |++||=-|.+|+++.|--
T Consensus        14 iI~KsGsWysy~~~~lgQ   31 (71)
T 3cmw_A           14 LIEKAGAWYSYKGEKIGQ   31 (71)
T ss_dssp             SEEEETTEEEETTEEEEE
T ss_pred             HHHCCCCHHHCCCCCCCC
T ss_conf             640677412103642037


No 8  
>>2zu2_A 3C-like proteinase; protease-inhibitor complex, cytoplasm, hydrolase, membrane, metal-binding, protease, ribosomal frameshifting; 1.80A {Human coronavirus 229E} PDB: 1p9s_A (A:1-190)
Probab=13.50  E-value=1.2e+02  Score=14.90  Aligned_cols=26  Identities=19%  Similarity=0.437  Sum_probs=22.1

Q ss_pred             CCCEEEECCCEEECCCCCCCCCCCCE
Q ss_conf             22048964613201110024356602
Q 537021.9.peg.1    5 SLDWIYFGDEMIIPKKLECSSDLNHV   30 (37)
Q Consensus         5 sldwiyfgdemiipkklecssdlnhv   30 (37)
                      .|.+++.||..+-|...-|++|..-.
T Consensus        26 ~LNGlWL~d~V~CPRHVi~~~~~~~~   51 (190)
T 2zu2_A           26 VLNGLWLGDIVYCPRHVIASNTTSAI   51 (190)
T ss_dssp             EEEEEEETTEEEEEGGGGCSCCSSCC
T ss_pred             EEEEEEECCEEECCCEEEECCCCCCC
T ss_conf             47417768999746606634767787


No 9  
>>3i26_A Hemagglutinin-esterase; SGNH-hydrolase fold, swiss roll, envelope protein, glycoprotein, membrane, transmembrane, virion, cell membrane; HET: NAG BMA MAN; 1.80A {Breda virus serotype 1} PDB: 3i27_A* (A:1-90,A:266-307)
Probab=12.85  E-value=76  Score=15.88  Aligned_cols=10  Identities=50%  Similarity=1.192  Sum_probs=8.3

Q ss_pred             CCCEEEECCC
Q ss_conf             2204896461
Q 537021.9.peg.1    5 SLDWIYFGDE   14 (37)
Q Consensus         5 sldwiyfgde   14 (37)
                      .-||+-|||.
T Consensus        14 n~dW~~FGDS   23 (132)
T 3i26_A           14 TFDWCGFGDS   23 (132)
T ss_dssp             SSCEEEEESG
T ss_pred             CCCEEEECCC
T ss_conf             5654552475


No 10 
>>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1986-2050)
Probab=12.37  E-value=1.1e+02  Score=15.11  Aligned_cols=18  Identities=22%  Similarity=0.420  Sum_probs=14.8

Q ss_pred             CCCCCCCEEEECCCEEEC
Q ss_conf             953222048964613201
Q 537021.9.peg.1    1 VLKKSLDWIYFGDEMIIP   18 (37)
Q Consensus         1 vlkksldwiyfgdemiip   18 (37)
                      +++||=-|.+|+++-|--
T Consensus        14 iI~KsGsWysy~~~~lgQ   31 (65)
T 3cmu_A           14 LIEKAGAWYSYKGEKIGQ   31 (65)
T ss_dssp             SSEEETTEEEETTEEEEE
T ss_pred             HHHCCCCEEEECCCCCCC
T ss_conf             211047248752523156


Done!