Query 537021.9.peg.1101_1 Match_columns 37 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed May 25 08:09:57 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1101.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3cmu_A Protein RECA, recombin 16.0 75 0.0022 15.9 1.6 18 1-18 14-31 (69) 2 >3cmu_A Protein RECA, recombin 14.5 87 0.0026 15.6 1.6 18 1-18 14-31 (71) 3 >3cmu_A Protein RECA, recombin 14.5 87 0.0026 15.6 1.6 18 1-18 14-31 (71) 4 >2zr9_A Protein RECA, recombin 14.4 88 0.0026 15.6 1.6 19 1-19 14-32 (78) 5 >3cmw_A Protein RECA, recombin 13.7 87 0.0026 15.6 1.4 18 1-18 14-31 (71) 6 >3cmw_A Protein RECA, recombin 13.7 87 0.0026 15.6 1.4 18 1-18 14-31 (71) 7 >3cmw_A Protein RECA, recombin 13.7 87 0.0026 15.6 1.4 18 1-18 14-31 (71) 8 >2zu2_A 3C-like proteinase; pr 13.5 1.2E+02 0.0036 14.9 2.1 26 5-30 26-51 (190) 9 >3i26_A Hemagglutinin-esterase 12.8 76 0.0022 15.9 0.9 10 5-14 14-23 (132) 10 >3cmu_A Protein RECA, recombin 12.4 1.1E+02 0.0032 15.1 1.6 18 1-18 14-31 (65) No 1 >>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1292-1360) Probab=15.99 E-value=75 Score=15.90 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=14.9 Q ss_pred CCCCCCCEEEECCCEEEC Q ss_conf 953222048964613201 Q 537021.9.peg.1 1 VLKKSLDWIYFGDEMIIP 18 (37) Q Consensus 1 vlkksldwiyfgdemiip 18 (37) +++||=-|.+|+++.|-- T Consensus 14 ii~KsGsWysy~ge~lGQ 31 (69) T 3cmu_A 14 LIEKAGAWYSYKGEKIGQ 31 (69) T ss_dssp SSEEETTEEEETTEEEEE T ss_pred HHHHCCCEEEECCCCCCC T ss_conf 222047327632636456 No 2 >>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:943-1013) Probab=14.47 E-value=87 Score=15.59 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=15.0 Q ss_pred CCCCCCCEEEECCCEEEC Q ss_conf 953222048964613201 Q 537021.9.peg.1 1 VLKKSLDWIYFGDEMIIP 18 (37) Q Consensus 1 vlkksldwiyfgdemiip 18 (37) |++||=-|.+|+++.|-- T Consensus 14 iI~KsGsWysy~~~~lgQ 31 (71) T 3cmu_A 14 LIEKAGAWYSYKGEKIGQ 31 (71) T ss_dssp SSEEETTEEEETTEEEEE T ss_pred EEECCCCEEEECCCEECC T ss_conf 041378537623414056 No 3 >>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:594-664) Probab=14.47 E-value=87 Score=15.59 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=15.0 Q ss_pred CCCCCCCEEEECCCEEEC Q ss_conf 953222048964613201 Q 537021.9.peg.1 1 VLKKSLDWIYFGDEMIIP 18 (37) Q Consensus 1 vlkksldwiyfgdemiip 18 (37) |++||=-|.+|+++.|-- T Consensus 14 iI~KsGsWysy~~~~lgQ 31 (71) T 3cmu_A 14 LIEKAGAWYSYKGEKIGQ 31 (71) T ss_dssp SSEEETTEEEETTEEEEE T ss_pred EEEECCCCCCCCCCHHCC T ss_conf 356425533002322115 No 4 >>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, cytoplasm, DNA damage, DNA recombination; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... (A:272-349) Probab=14.35 E-value=88 Score=15.57 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=15.3 Q ss_pred CCCCCCCEEEECCCEEECC Q ss_conf 9532220489646132011 Q 537021.9.peg.1 1 VLKKSLDWIYFGDEMIIPK 19 (37) Q Consensus 1 vlkksldwiyfgdemiipk 19 (37) +++||=-|.+|+++.|-.- T Consensus 14 iI~KsGsWysy~g~~lGQG 32 (78) T 2zr9_A 14 FIRKSGSWFTYEGEQLGQG 32 (78) T ss_dssp SSEEETTEEEETTEEEEES T ss_pred CEEEEEEEEEECCEEHHHH T ss_conf 4661223598899670565 No 5 >>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:943-1013) Probab=13.66 E-value=87 Score=15.59 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=14.8 Q ss_pred CCCCCCCEEEECCCEEEC Q ss_conf 953222048964613201 Q 537021.9.peg.1 1 VLKKSLDWIYFGDEMIIP 18 (37) Q Consensus 1 vlkksldwiyfgdemiip 18 (37) |++||=-|.+|+++.|-- T Consensus 14 iI~KsGsWysy~~~~lgQ 31 (71) T 3cmw_A 14 LIEKAGAWYSYKGEKIGQ 31 (71) T ss_dssp SEEEETTEEEETTEEEEE T ss_pred HHHHCCCCEEECCCHHCC T ss_conf 243237414415622123 No 6 >>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:594-664) Probab=13.66 E-value=87 Score=15.59 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=14.8 Q ss_pred CCCCCCCEEEECCCEEEC Q ss_conf 953222048964613201 Q 537021.9.peg.1 1 VLKKSLDWIYFGDEMIIP 18 (37) Q Consensus 1 vlkksldwiyfgdemiip 18 (37) |++||=-|.+|+++.|-- T Consensus 14 iI~KsGsWysy~~~~lgQ 31 (71) T 3cmw_A 14 LIEKAGAWYSYKGEKIGQ 31 (71) T ss_dssp SEEEETTEEEETTEEEEE T ss_pred EEECCCCCCCCCCCEECC T ss_conf 274388622246735147 No 7 >>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* (A:245-315) Probab=13.66 E-value=87 Score=15.59 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=14.8 Q ss_pred CCCCCCCEEEECCCEEEC Q ss_conf 953222048964613201 Q 537021.9.peg.1 1 VLKKSLDWIYFGDEMIIP 18 (37) Q Consensus 1 vlkksldwiyfgdemiip 18 (37) |++||=-|.+|+++.|-- T Consensus 14 iI~KsGsWysy~~~~lgQ 31 (71) T 3cmw_A 14 LIEKAGAWYSYKGEKIGQ 31 (71) T ss_dssp SEEEETTEEEETTEEEEE T ss_pred HHHCCCCHHHCCCCCCCC T ss_conf 640677412103642037 No 8 >>2zu2_A 3C-like proteinase; protease-inhibitor complex, cytoplasm, hydrolase, membrane, metal-binding, protease, ribosomal frameshifting; 1.80A {Human coronavirus 229E} PDB: 1p9s_A (A:1-190) Probab=13.50 E-value=1.2e+02 Score=14.90 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=22.1 Q ss_pred CCCEEEECCCEEECCCCCCCCCCCCE Q ss_conf 22048964613201110024356602 Q 537021.9.peg.1 5 SLDWIYFGDEMIIPKKLECSSDLNHV 30 (37) Q Consensus 5 sldwiyfgdemiipkklecssdlnhv 30 (37) .|.+++.||..+-|...-|++|..-. T Consensus 26 ~LNGlWL~d~V~CPRHVi~~~~~~~~ 51 (190) T 2zu2_A 26 VLNGLWLGDIVYCPRHVIASNTTSAI 51 (190) T ss_dssp EEEEEEETTEEEEEGGGGCSCCSSCC T ss_pred EEEEEEECCEEECCCEEEECCCCCCC T ss_conf 47417768999746606634767787 No 9 >>3i26_A Hemagglutinin-esterase; SGNH-hydrolase fold, swiss roll, envelope protein, glycoprotein, membrane, transmembrane, virion, cell membrane; HET: NAG BMA MAN; 1.80A {Breda virus serotype 1} PDB: 3i27_A* (A:1-90,A:266-307) Probab=12.85 E-value=76 Score=15.88 Aligned_cols=10 Identities=50% Similarity=1.192 Sum_probs=8.3 Q ss_pred CCCEEEECCC Q ss_conf 2204896461 Q 537021.9.peg.1 5 SLDWIYFGDE 14 (37) Q Consensus 5 sldwiyfgde 14 (37) .-||+-|||. T Consensus 14 n~dW~~FGDS 23 (132) T 3i26_A 14 TFDWCGFGDS 23 (132) T ss_dssp SSCEEEEESG T ss_pred CCCEEEECCC T ss_conf 5654552475 No 10 >>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} (A:1986-2050) Probab=12.37 E-value=1.1e+02 Score=15.11 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=14.8 Q ss_pred CCCCCCCEEEECCCEEEC Q ss_conf 953222048964613201 Q 537021.9.peg.1 1 VLKKSLDWIYFGDEMIIP 18 (37) Q Consensus 1 vlkksldwiyfgdemiip 18 (37) +++||=-|.+|+++-|-- T Consensus 14 iI~KsGsWysy~~~~lgQ 31 (65) T 3cmu_A 14 LIEKAGAWYSYKGEKIGQ 31 (65) T ss_dssp SSEEETTEEEETTEEEEE T ss_pred HHHCCCCEEEECCCCCCC T ss_conf 211047248752523156 Done!