BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 537021.9.peg.1101_1
         (37 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done


Results from round 1


>gi|315122578|ref|YP_004063067.1| hypothetical protein CKC_04150 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495980|gb|ADR52579.1| hypothetical protein CKC_04150 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 174

 Score = 40.8 bits (94), Expect = 0.055,   Method: Composition-based stats.
 Identities = 16/22 (72%), Positives = 20/22 (90%)

Query: 3   KKSLDWIYFGDEMIIPKKLECS 24
           +KSLDWIYFGDE+I+PK +E S
Sbjct: 148 QKSLDWIYFGDEIIVPKSIERS 169


>gi|315122488|ref|YP_004062977.1| hypothetical protein CKC_03700 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495890|gb|ADR52489.1| hypothetical protein CKC_03700 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 185

 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/19 (84%), Positives = 17/19 (89%)

Query: 2   LKKSLDWIYFGDEMIIPKK 20
           L K+LDWIYFGDE IIPKK
Sbjct: 147 LGKTLDWIYFGDEEIIPKK 165


>gi|254781218|ref|YP_003065631.1| hypothetical protein CLIBASIA_05625 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040895|gb|ACT57691.1| hypothetical protein CLIBASIA_05625 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|317120682|gb|ADV02505.1| hypothetical protein SC1_gp125 [Liberibacter phage SC1]
 gi|317120826|gb|ADV02647.1| hypothetical protein SC1_gp125 [Candidatus Liberibacter asiaticus]
          Length = 205

 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/22 (68%), Positives = 19/22 (86%)

Query: 1   VLKKSLDWIYFGDEMIIPKKLE 22
           V KK LDWIYFGDE+I+PK ++
Sbjct: 164 VTKKHLDWIYFGDEVIVPKSIK 185


>gi|315121942|ref|YP_004062431.1| hypothetical protein CKC_00960 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495344|gb|ADR51943.1| hypothetical protein CKC_00960 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 193

 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/19 (84%), Positives = 16/19 (84%)

Query: 2   LKKSLDWIYFGDEMIIPKK 20
           L K LDWIYFGDE IIPKK
Sbjct: 147 LGKPLDWIYFGDEPIIPKK 165


>gi|317120724|gb|ADV02546.1| hypothetical protein SC2_gp125 [Liberibacter phage SC2]
 gi|317120785|gb|ADV02606.1| hypothetical protein SC2_gp125 [Candidatus Liberibacter asiaticus]
          Length = 199

 Score = 38.1 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/20 (75%), Positives = 18/20 (90%)

Query: 3   KKSLDWIYFGDEMIIPKKLE 22
           KK LDWIYFGDE+IIPK ++
Sbjct: 167 KKHLDWIYFGDEVIIPKSIK 186


>gi|315122908|ref|YP_004063397.1| hypothetical protein CKC_05820 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496310|gb|ADR52909.1| hypothetical protein CKC_05820 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 210

 Score = 37.7 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 15/19 (78%), Positives = 16/19 (84%)

Query: 2   LKKSLDWIYFGDEMIIPKK 20
           L K LDWIYFGDE I+PKK
Sbjct: 147 LGKPLDWIYFGDEEIVPKK 165


Searching..................................................done


Results from round 2





CONVERGED!
>gi|315122578|ref|YP_004063067.1| hypothetical protein CKC_04150 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495980|gb|ADR52579.1| hypothetical protein CKC_04150 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 174

 Score = 41.6 bits (96), Expect = 0.034,   Method: Composition-based stats.
 Identities = 16/22 (72%), Positives = 20/22 (90%)

Query: 3   KKSLDWIYFGDEMIIPKKLECS 24
           +KSLDWIYFGDE+I+PK +E S
Sbjct: 148 QKSLDWIYFGDEIIVPKSIERS 169


>gi|254781218|ref|YP_003065631.1| hypothetical protein CLIBASIA_05625 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040895|gb|ACT57691.1| hypothetical protein CLIBASIA_05625 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|317120682|gb|ADV02505.1| hypothetical protein SC1_gp125 [Liberibacter phage SC1]
 gi|317120826|gb|ADV02647.1| hypothetical protein SC1_gp125 [Candidatus Liberibacter asiaticus]
          Length = 205

 Score = 40.0 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/22 (68%), Positives = 19/22 (86%)

Query: 1   VLKKSLDWIYFGDEMIIPKKLE 22
           V KK LDWIYFGDE+I+PK ++
Sbjct: 164 VTKKHLDWIYFGDEVIVPKSIK 185


>gi|317120724|gb|ADV02546.1| hypothetical protein SC2_gp125 [Liberibacter phage SC2]
 gi|317120785|gb|ADV02606.1| hypothetical protein SC2_gp125 [Candidatus Liberibacter asiaticus]
          Length = 199

 Score = 39.6 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/20 (75%), Positives = 18/20 (90%)

Query: 3   KKSLDWIYFGDEMIIPKKLE 22
           KK LDWIYFGDE+IIPK ++
Sbjct: 167 KKHLDWIYFGDEVIIPKSIK 186


>gi|315122488|ref|YP_004062977.1| hypothetical protein CKC_03700 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495890|gb|ADR52489.1| hypothetical protein CKC_03700 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 185

 Score = 39.6 bits (91), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/19 (84%), Positives = 17/19 (89%)

Query: 2   LKKSLDWIYFGDEMIIPKK 20
           L K+LDWIYFGDE IIPKK
Sbjct: 147 LGKTLDWIYFGDEEIIPKK 165


>gi|315121942|ref|YP_004062431.1| hypothetical protein CKC_00960 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495344|gb|ADR51943.1| hypothetical protein CKC_00960 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 193

 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/19 (84%), Positives = 16/19 (84%)

Query: 2   LKKSLDWIYFGDEMIIPKK 20
           L K LDWIYFGDE IIPKK
Sbjct: 147 LGKPLDWIYFGDEPIIPKK 165


>gi|315122908|ref|YP_004063397.1| hypothetical protein CKC_05820 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496310|gb|ADR52909.1| hypothetical protein CKC_05820 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 210

 Score = 38.1 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/19 (78%), Positives = 16/19 (84%)

Query: 2   LKKSLDWIYFGDEMIIPKK 20
           L K LDWIYFGDE I+PKK
Sbjct: 147 LGKPLDWIYFGDEEIVPKK 165


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.320    0.137    0.412 

Lambda     K      H
   0.267   0.0453    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 778,263,758
Number of Sequences: 13984884
Number of extensions: 15558906
Number of successful extensions: 24794
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24782
Number of HSP's gapped (non-prelim): 12
length of query: 37
length of database: 4,792,584,752
effective HSP length: 11
effective length of query: 26
effective length of database: 4,638,751,028
effective search space: 120607526728
effective search space used: 120607526728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.7 bits)