BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= 537021.9.peg.1101_1
(37 letters)
Database: nr
13,984,884 sequences; 4,792,584,752 total letters
Searching..................................................done
>gi|315122578|ref|YP_004063067.1| hypothetical protein CKC_04150 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495980|gb|ADR52579.1| hypothetical protein CKC_04150 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 174
Score = 41.6 bits (96), Expect = 0.034, Method: Composition-based stats.
Identities = 16/22 (72%), Positives = 20/22 (90%)
Query: 3 KKSLDWIYFGDEMIIPKKLECS 24
+KSLDWIYFGDE+I+PK +E S
Sbjct: 148 QKSLDWIYFGDEIIVPKSIERS 169
>gi|254781218|ref|YP_003065631.1| hypothetical protein CLIBASIA_05625 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040895|gb|ACT57691.1| hypothetical protein CLIBASIA_05625 [Candidatus Liberibacter
asiaticus str. psy62]
gi|317120682|gb|ADV02505.1| hypothetical protein SC1_gp125 [Liberibacter phage SC1]
gi|317120826|gb|ADV02647.1| hypothetical protein SC1_gp125 [Candidatus Liberibacter asiaticus]
Length = 205
Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 19/22 (86%)
Query: 1 VLKKSLDWIYFGDEMIIPKKLE 22
V KK LDWIYFGDE+I+PK ++
Sbjct: 164 VTKKHLDWIYFGDEVIVPKSIK 185
>gi|317120724|gb|ADV02546.1| hypothetical protein SC2_gp125 [Liberibacter phage SC2]
gi|317120785|gb|ADV02606.1| hypothetical protein SC2_gp125 [Candidatus Liberibacter asiaticus]
Length = 199
Score = 39.6 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 3 KKSLDWIYFGDEMIIPKKLE 22
KK LDWIYFGDE+IIPK ++
Sbjct: 167 KKHLDWIYFGDEVIIPKSIK 186
>gi|315122488|ref|YP_004062977.1| hypothetical protein CKC_03700 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495890|gb|ADR52489.1| hypothetical protein CKC_03700 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 185
Score = 39.6 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 2 LKKSLDWIYFGDEMIIPKK 20
L K+LDWIYFGDE IIPKK
Sbjct: 147 LGKTLDWIYFGDEEIIPKK 165
>gi|315121942|ref|YP_004062431.1| hypothetical protein CKC_00960 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495344|gb|ADR51943.1| hypothetical protein CKC_00960 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 193
Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 16/19 (84%), Positives = 16/19 (84%)
Query: 2 LKKSLDWIYFGDEMIIPKK 20
L K LDWIYFGDE IIPKK
Sbjct: 147 LGKPLDWIYFGDEPIIPKK 165
>gi|315122908|ref|YP_004063397.1| hypothetical protein CKC_05820 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496310|gb|ADR52909.1| hypothetical protein CKC_05820 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 210
Score = 38.1 bits (87), Expect = 0.45, Method: Composition-based stats.
Identities = 15/19 (78%), Positives = 16/19 (84%)
Query: 2 LKKSLDWIYFGDEMIIPKK 20
L K LDWIYFGDE I+PKK
Sbjct: 147 LGKPLDWIYFGDEEIVPKK 165
Database: nr
Posted date: May 13, 2011 4:10 AM
Number of letters in database: 999,999,932
Number of sequences in database: 2,987,209
Database: /data/usr2/db/fasta/nr.01
Posted date: May 13, 2011 4:17 AM
Number of letters in database: 999,998,956
Number of sequences in database: 2,896,973
Database: /data/usr2/db/fasta/nr.02
Posted date: May 13, 2011 4:23 AM
Number of letters in database: 999,999,979
Number of sequences in database: 2,907,862
Database: /data/usr2/db/fasta/nr.03
Posted date: May 13, 2011 4:29 AM
Number of letters in database: 999,999,513
Number of sequences in database: 2,932,190
Database: /data/usr2/db/fasta/nr.04
Posted date: May 13, 2011 4:33 AM
Number of letters in database: 792,586,372
Number of sequences in database: 2,260,650
Lambda K H
0.320 0.137 0.412
Lambda K H
0.267 0.0453 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,026,216
Number of Sequences: 13984884
Number of extensions: 9121551
Number of successful extensions: 15109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15103
Number of HSP's gapped (non-prelim): 6
length of query: 37
length of database: 4,792,584,752
effective HSP length: 11
effective length of query: 26
effective length of database: 4,638,751,028
effective search space: 120607526728
effective search space used: 120607526728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.7 bits)