Query         537021.9.peg.1107_1
Match_columns 40
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed May 25 08:40:11 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_1107.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1t77_A Lipopolysaccharide-res  18.4      24 0.00072   17.5  -0.4   20   10-29     80-99  (115)
  2 >1twf_B DNA-directed RNA polym   8.4      53  0.0016   16.0  -1.1   18   10-27     36-53  (175)
  3 >2rgn_B RHOA/RAC/CDC42 exchang   6.4 2.5E+02  0.0073   13.0   1.6   14   12-25     36-49  (164)
  4 >1txd_A RHO guanine nucleotide   6.0 2.6E+02  0.0077   12.9   1.7   11   15-25     44-54  (156)
  5 >1h2w_A Prolyl endopeptidase;    5.9 2.7E+02  0.0079   12.9   2.4   17   12-28      8-24  (47)
  6 >2ox6_A Hypothetical protein S   5.5 2.8E+02  0.0084   12.7   2.5   24    3-26     70-93  (166)
  7 >2bkl_A Prolyl endopeptidase;    5.2   3E+02  0.0088   12.6   2.4   17   12-28      9-25  (48)
  8 >1kz7_A Guanine nucleotide exc   5.0 3.1E+02  0.0091   12.6   1.5   10   16-25     44-53  (158)
  9 >1dbh_A Protein (human SOS 1);   4.7 3.3E+02  0.0096   12.5   1.6   13   13-25     44-56  (140)
 10 >1b8k_A NT3, protein (neurotro   4.6 2.4E+02  0.0072   13.0   0.5   10   14-23     47-56  (119)

No 1  
>>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} (A:1-115)
Probab=18.37  E-value=24  Score=17.54  Aligned_cols=20  Identities=20%  Similarity=0.479  Sum_probs=15.3

Q ss_pred             HHEEECCEEEEEEECCCCCC
Q ss_conf             63010305999990677114
Q 537021.9.peg.1   10 FFFREKRQYFFVFNDTNQMN   29 (40)
Q Consensus        10 fffrekrqyffvfndtnqmn   29 (40)
                      .||...+.|||+|.+.+..+
T Consensus        80 IF~~dg~s~f~~F~~~~~r~   99 (115)
T 1t77_A           80 IFMANRVAVMFNFPDPATVK   99 (115)
T ss_dssp             EEETTSCEEEEECSSHHHHH
T ss_pred             EEECCCCEEEEECCCHHHHH
T ss_conf             99718967999838888999


No 2  
>>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (B:1-42,B:542-549,B:630-754)
Probab=8.41  E-value=53  Score=16.02  Aligned_cols=18  Identities=28%  Similarity=0.399  Sum_probs=11.5

Q ss_pred             HHEEECCEEEEEEECCCC
Q ss_conf             630103059999906771
Q 537021.9.peg.1   10 FFFREKRQYFFVFNDTNQ   27 (40)
Q Consensus        10 fffrekrqyffvfndtnq   27 (40)
                      -||+||.|-|.+|.|...
T Consensus        36 ~~f~~kg~~~~IfTDaGR   53 (175)
T 1twf_B           36 AFFREKGMSCISVGTAGR   53 (175)
T ss_dssp             HHHHHHTTCEECCCCSCC
T ss_pred             HHHCCCCEEEECCCCCCC
T ss_conf             986899913311345765


No 3  
>>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, signaling complex, protein-protein complex, rhogef; HET: GDP; 3.50A {Homo sapiens} (B:191-354)
Probab=6.44  E-value=2.5e+02  Score=13.01  Aligned_cols=14  Identities=21%  Similarity=0.501  Sum_probs=10.1

Q ss_pred             EEECCEEEEEEECC
Q ss_conf             01030599999067
Q 537021.9.peg.1   12 FREKRQYFFVFNDT   25 (40)
Q Consensus        12 frekrqyffvfndt   25 (40)
                      .+.+.-|||.|||.
T Consensus        36 ~~~~~r~~fLF~d~   49 (164)
T 2rgn_B           36 SRGRERRVFLFEQI   49 (164)
T ss_dssp             CCCCEEEEEEESSE
T ss_pred             CCCCHHHHHHHCCE
T ss_conf             77612547661550


No 4  
>>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} (A:230-385)
Probab=6.04  E-value=2.6e+02  Score=12.90  Aligned_cols=11  Identities=18%  Similarity=0.377  Sum_probs=8.1

Q ss_pred             CCEEEEEEECC
Q ss_conf             30599999067
Q 537021.9.peg.1   15 KRQYFFVFNDT   25 (40)
Q Consensus        15 krqyffvfndt   25 (40)
                      +.-|+|.|||.
T Consensus        44 k~r~~fLF~d~   54 (156)
T 1txd_A           44 IDLYTLLLEDI   54 (156)
T ss_dssp             CCEEEEEESSE
T ss_pred             EEEEEEECCCE
T ss_conf             57999950797


No 5  
>>1h2w_A Prolyl endopeptidase; hydrolase, prolyl oligopeptidase, amnesia, alpha/ beta- hydrolase, beta-propeller, serine protease; 1.39A {Sus scrofa} (A:73-119)
Probab=5.94  E-value=2.7e+02  Score=12.87  Aligned_cols=17  Identities=29%  Similarity=0.770  Sum_probs=12.6

Q ss_pred             EEECCEEEEEEECCCCC
Q ss_conf             01030599999067711
Q 537021.9.peg.1   12 FREKRQYFFVFNDTNQM   28 (40)
Q Consensus        12 frekrqyffvfndtnqm   28 (40)
                      |+....|||..||--|-
T Consensus         8 ~krG~~yf~~~N~GLQn   24 (47)
T 1h2w_A            8 FKKGKRYFYFYNTGLQN   24 (47)
T ss_dssp             EEETTEEEEEEECSSCS
T ss_pred             EEECCEEEEEEECCCCC
T ss_conf             78689999998048776


No 6  
>>2ox6_A Hypothetical protein SO3848; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 1.70A {Shewanella oneidensis mr-1} (A:)
Probab=5.53  E-value=2.8e+02  Score=12.75  Aligned_cols=24  Identities=42%  Similarity=0.445  Sum_probs=20.9

Q ss_pred             HHHHHHHHHEEECCEEEEEEECCC
Q ss_conf             667666463010305999990677
Q 537021.9.peg.1    3 YDEIEDLFFFREKRQYFFVFNDTN   26 (40)
Q Consensus         3 ydeiedlfffrekrqyffvfndtn   26 (40)
                      .|.||.||--..||+.-||.-.|.
T Consensus        70 ~dgieelfkkepkr~l~fvvyptq   93 (166)
T 2ox6_A           70 TDGIEALFKKEPKRHLAFVVYPTQ   93 (166)
T ss_dssp             HHHHHHHHTTSCCSEEEEEECSSH
T ss_pred             CCCHHHHHHHCCCCEEEEEECCHH
T ss_conf             422999973184303678972318


No 7  
>>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} (A:68-115)
Probab=5.19  E-value=3e+02  Score=12.64  Aligned_cols=17  Identities=18%  Similarity=0.466  Sum_probs=12.6

Q ss_pred             EEECCEEEEEEECCCCC
Q ss_conf             01030599999067711
Q 537021.9.peg.1   12 FREKRQYFFVFNDTNQM   28 (40)
Q Consensus        12 frekrqyffvfndtnqm   28 (40)
                      ++....|||..|+--|-
T Consensus         9 ~~rG~ryF~~~n~GlQn   25 (48)
T 2bkl_A            9 SRRNGRFFYVRTHKDKE   25 (48)
T ss_dssp             EEETTEEEEEEECTTCS
T ss_pred             EEECCEEEEEEEECCCC
T ss_conf             79889589999818996


No 8  
>>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} (A:196-353)
Probab=5.05  E-value=3.1e+02  Score=12.59  Aligned_cols=10  Identities=10%  Similarity=0.451  Sum_probs=7.4

Q ss_pred             CEEEEEEECC
Q ss_conf             0599999067
Q 537021.9.peg.1   16 RQYFFVFNDT   25 (40)
Q Consensus        16 rqyffvfndt   25 (40)
                      .-|+|.|||.
T Consensus        44 ~r~~fLF~d~   53 (158)
T 1kz7_A           44 QRHLFLHEKA   53 (158)
T ss_dssp             EEEEEEESSE
T ss_pred             EEEEEEECCE
T ss_conf             5899997886


No 9  
>>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} (A:215-354)
Probab=4.69  E-value=3.3e+02  Score=12.47  Aligned_cols=13  Identities=15%  Similarity=0.480  Sum_probs=9.2

Q ss_pred             EECCEEEEEEECC
Q ss_conf             1030599999067
Q 537021.9.peg.1   13 REKRQYFFVFNDT   25 (40)
Q Consensus        13 rekrqyffvfndt   25 (40)
                      +.++.|||.|||.
T Consensus        44 ~~k~r~~fLf~d~   56 (140)
T 1dbh_A           44 AKHERHIFLFDGL   56 (140)
T ss_dssp             CSSCEEEEEESSE
T ss_pred             CCCEEEEEECCCE
T ss_conf             5653699961877


No 10 
>>1b8k_A NT3, protein (neurotrophin-3); complex (growth factor/growth factor); 2.15A {Homo sapiens} (A:)
Probab=4.57  E-value=2.4e+02  Score=13.05  Aligned_cols=10  Identities=30%  Similarity=0.643  Sum_probs=7.0

Q ss_pred             ECCEEEEEEE
Q ss_conf             0305999990
Q 537021.9.peg.1   14 EKRQYFFVFN   23 (40)
Q Consensus        14 ekrqyffvfn   23 (40)
                      ..+||||.-.
T Consensus        47 ~~kQyF~eTk   56 (119)
T 1b8k_A           47 PVKQYFYETR   56 (119)
T ss_dssp             -CBCCEEEEE
T ss_pred             EEEEEEEEEE
T ss_conf             7899999999


Done!