Query 537021.9.peg.1107_1
Match_columns 40
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed May 25 06:59:40 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1107.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zc3_B Exocyst complex protein 9.8 99 0.0042 14.1 1.5 10 16-25 27-36 (113)
2 3gdz_A Arginyl-tRNA synthetase 8.0 83 0.0035 14.5 0.5 10 25-34 1-10 (109)
3 1hcf_A Neurotrophin-4; transfe 6.1 1.1E+02 0.0048 13.8 0.4 11 14-24 51-61 (130)
4 3k2t_A LMO2511 protein; lister 5.6 1.6E+02 0.0069 13.1 1.0 15 16-30 26-42 (57)
5 2ox6_A Hypothetical protein SO 5.5 2E+02 0.0084 12.8 2.5 24 3-26 70-93 (166)
6 1v61_A RAC/CDC42 guanine nucle 5.4 1.8E+02 0.0076 12.9 1.1 12 14-25 44-55 (132)
7 2kzb_A Autophagy-related prote 5.2 2.1E+02 0.0088 12.6 2.0 16 13-28 20-35 (118)
8 2kzk_A Uncharacterized protein 4.6 2.2E+02 0.0094 12.5 1.1 14 13-26 16-29 (107)
9 3ka5_A Ribosome-associated pro 4.2 2.1E+02 0.0087 12.7 0.7 12 19-30 29-42 (65)
10 1bnd_A BDNF, brain derived neu 4.1 2.3E+02 0.0096 12.5 0.9 7 15-21 49-55 (119)
No 1
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=9.76 E-value=99 Score=14.11 Aligned_cols=10 Identities=40% Similarity=0.474 Sum_probs=7.5
Q ss_pred CEEEEEEECC
Q ss_conf 0599999067
Q 537021.9.peg.1 16 RQYFFVFNDT 25 (40)
Q Consensus 16 rqyffvfndt 25 (40)
+-|+|.|||.
T Consensus 27 ~~~~fLFnD~ 36 (113)
T 1zc3_B 27 RVHGFLMNDC 36 (113)
T ss_dssp EEEEEEESSE
T ss_pred EEEEEEECCE
T ss_conf 7999987264
No 2
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumoniae MGH 78578, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=8.05 E-value=83 Score=14.46 Aligned_cols=10 Identities=50% Similarity=0.866 Sum_probs=5.3
Q ss_pred CCCCCHHHHE
Q ss_conf 7711486503
Q 537021.9.peg.1 25 TNQMNIESFL 34 (40)
Q Consensus 25 tnqmniesfl 34 (40)
+|.|||++.|
T Consensus 1 ~n~MnI~~~l 10 (109)
T 3gdz_A 1 SNAMNIQALL 10 (109)
T ss_dssp CCCCCHHHHH
T ss_pred CCCCCHHHHH
T ss_conf 9841799999
No 3
>1hcf_A Neurotrophin-4; transferase/hormone, complex(transferase/growth factor), neurotrophin-4/5, TRKB receptor, NGF-beta superfamily; 2.7A {Homo sapiens} SCOP: g.17.1.3 PDB: 1b98_A 1b8m_B
Probab=6.11 E-value=1.1e+02 Score=13.83 Aligned_cols=11 Identities=45% Similarity=0.594 Sum_probs=7.7
Q ss_pred ECCEEEEEEEC
Q ss_conf 03059999906
Q 537021.9.peg.1 14 EKRQYFFVFND 24 (40)
Q Consensus 14 ekrqyffvfnd 24 (40)
.++||||+-.=
T Consensus 51 ~~kQyFfETrC 61 (130)
T 1hcf_A 51 PLRQYFFETRC 61 (130)
T ss_dssp EEECCEEEEEE
T ss_pred EEEEEEEEEEE
T ss_conf 87899999987
No 4
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=5.61 E-value=1.6e+02 Score=13.13 Aligned_cols=15 Identities=47% Similarity=0.813 Sum_probs=9.3
Q ss_pred CEEEEEEEC--CCCCCH
Q ss_conf 059999906--771148
Q 537021.9.peg.1 16 RQYFFVFND--TNQMNI 30 (40)
Q Consensus 16 rqyffvfnd--tnqmni 30 (40)
..-||+|.+ |+++|+
T Consensus 26 ~~~f~vF~n~~t~~~nv 42 (57)
T 3k2t_A 26 GHSFYVYTDAETNGTNI 42 (57)
T ss_dssp TCSEEEEEBSSSCCEEE
T ss_pred CCCEEEEEECCCCCEEE
T ss_conf 99499999368996989
No 5
>2ox6_A Hypothetical protein SO3848; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 1.70A {Shewanella oneidensis mr-1} SCOP: a.35.1.6
Probab=5.53 E-value=2e+02 Score=12.75 Aligned_cols=24 Identities=42% Similarity=0.445 Sum_probs=20.9
Q ss_pred HHHHHHHHHEEECCEEEEEEECCC
Q ss_conf 667666463010305999990677
Q 537021.9.peg.1 3 YDEIEDLFFFREKRQYFFVFNDTN 26 (40)
Q Consensus 3 ydeiedlfffrekrqyffvfndtn 26 (40)
.|.||.||--..||+.-||.-.|.
T Consensus 70 ~dgieelfkkepkr~lsfvvyptq 93 (166)
T 2ox6_A 70 TDGIEALFKKEPKRHLAFVVYPTQ 93 (166)
T ss_dssp HHHHHHHHTTSCCSEEEEEECSSH
T ss_pred CCCHHHHHHHCCCCEEEEEECCHH
T ss_conf 420999974184303678972318
No 6
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=5.39 E-value=1.8e+02 Score=12.93 Aligned_cols=12 Identities=25% Similarity=0.869 Sum_probs=8.2
Q ss_pred ECCEEEEEEECC
Q ss_conf 030599999067
Q 537021.9.peg.1 14 EKRQYFFVFNDT 25 (40)
Q Consensus 14 ekrqyffvfndt 25 (40)
-|..|||.|+|.
T Consensus 44 ~k~R~~fLF~~~ 55 (132)
T 1v61_A 44 KEERYFLLFSSV 55 (132)
T ss_dssp CCEEEEEECSSC
T ss_pred CCEEEEEEECCE
T ss_conf 525899996898
No 7
>2kzb_A Autophagy-related protein 19; selective autophagy, ATG19, alpha-mannosidase, protein trans; NMR {Saccharomyces cerevisiae}
Probab=5.20 E-value=2.1e+02 Score=12.64 Aligned_cols=16 Identities=44% Similarity=0.864 Sum_probs=12.1
Q ss_pred EECCEEEEEEECCCCC
Q ss_conf 1030599999067711
Q 537021.9.peg.1 13 REKRQYFFVFNDTNQM 28 (40)
Q Consensus 13 rekrqyffvfndtnqm 28 (40)
|...-||-.||.||-.
T Consensus 20 rDNSL~F~L~N~TN~i 35 (118)
T 2kzb_A 20 RDNSLYFQLFNNTNSV 35 (118)
T ss_dssp ETTEEEEEEEECSSSC
T ss_pred CCCEEEEEEECCCCEE
T ss_conf 7865899995477657
No 8
>2kzk_A Uncharacterized protein YOL083W; selective autophagy, ATG34, alpha-mannosidase, ATG19, protei transport; NMR {Saccharomyces cerevisiae}
Probab=4.58 E-value=2.2e+02 Score=12.51 Aligned_cols=14 Identities=29% Similarity=0.605 Sum_probs=0.0
Q ss_pred EECCEEEEEEECCC
Q ss_conf 10305999990677
Q 537021.9.peg.1 13 REKRQYFFVFNDTN 26 (40)
Q Consensus 13 rekrqyffvfndtn 26 (40)
|...-||-.||.||
T Consensus 16 ~DNSL~F~L~N~TN 29 (107)
T 2kzk_A 16 EDNSLHFILYNKTN 29 (107)
T ss_dssp BTTBCCEEEECCSS
T ss_pred CCCEEEEEEECCCC
T ss_conf 78748999954776
No 9
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=4.22 E-value=2.1e+02 Score=12.67 Aligned_cols=12 Identities=50% Similarity=1.187 Sum_probs=0.0
Q ss_pred EEEEEC--CCCCCH
Q ss_conf 999906--771148
Q 537021.9.peg.1 19 FFVFND--TNQMNI 30 (40)
Q Consensus 19 ffvfnd--tnqmni 30 (40)
||+|.+ |+++|+
T Consensus 29 F~vF~n~~t~~inv 42 (65)
T 3ka5_A 29 FFVFQNGDSNEVNV 42 (65)
T ss_dssp EEEEEETTTTEEEE
T ss_pred EEEEEECCCCCEEE
T ss_conf 99996055798888
No 10
>1bnd_A BDNF, brain derived neurotrophic factor; complex (growth factor/growth factor) complex; 2.30A {Homo sapiens} SCOP: g.17.1.3 PDB: 1b8m_A
Probab=4.13 E-value=2.3e+02 Score=12.47 Aligned_cols=7 Identities=43% Similarity=1.013 Sum_probs=0.0
Q ss_pred CCEEEEE
Q ss_conf 3059999
Q 537021.9.peg.1 15 KRQYFFV 21 (40)
Q Consensus 15 krqyffv 21 (40)
++||||.
T Consensus 49 ~kQyF~E 55 (119)
T 1bnd_A 49 LKQYFYE 55 (119)
T ss_dssp EECEEEE
T ss_pred EEEEEEE
T ss_conf 8999999
Done!