Query 537021.9.peg.1107_1 Match_columns 40 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 06:59:40 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1107.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1zc3_B Exocyst complex protein 9.8 99 0.0042 14.1 1.5 10 16-25 27-36 (113) 2 3gdz_A Arginyl-tRNA synthetase 8.0 83 0.0035 14.5 0.5 10 25-34 1-10 (109) 3 1hcf_A Neurotrophin-4; transfe 6.1 1.1E+02 0.0048 13.8 0.4 11 14-24 51-61 (130) 4 3k2t_A LMO2511 protein; lister 5.6 1.6E+02 0.0069 13.1 1.0 15 16-30 26-42 (57) 5 2ox6_A Hypothetical protein SO 5.5 2E+02 0.0084 12.8 2.5 24 3-26 70-93 (166) 6 1v61_A RAC/CDC42 guanine nucle 5.4 1.8E+02 0.0076 12.9 1.1 12 14-25 44-55 (132) 7 2kzb_A Autophagy-related prote 5.2 2.1E+02 0.0088 12.6 2.0 16 13-28 20-35 (118) 8 2kzk_A Uncharacterized protein 4.6 2.2E+02 0.0094 12.5 1.1 14 13-26 16-29 (107) 9 3ka5_A Ribosome-associated pro 4.2 2.1E+02 0.0087 12.7 0.7 12 19-30 29-42 (65) 10 1bnd_A BDNF, brain derived neu 4.1 2.3E+02 0.0096 12.5 0.9 7 15-21 49-55 (119) No 1 >1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B* Probab=9.76 E-value=99 Score=14.11 Aligned_cols=10 Identities=40% Similarity=0.474 Sum_probs=7.5 Q ss_pred CEEEEEEECC Q ss_conf 0599999067 Q 537021.9.peg.1 16 RQYFFVFNDT 25 (40) Q Consensus 16 rqyffvfndt 25 (40) +-|+|.|||. T Consensus 27 ~~~~fLFnD~ 36 (113) T 1zc3_B 27 RVHGFLMNDC 36 (113) T ss_dssp EEEEEEESSE T ss_pred EEEEEEECCE T ss_conf 7999987264 No 2 >3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumoniae MGH 78578, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Klebsiella pneumoniae subsp} Probab=8.05 E-value=83 Score=14.46 Aligned_cols=10 Identities=50% Similarity=0.866 Sum_probs=5.3 Q ss_pred CCCCCHHHHE Q ss_conf 7711486503 Q 537021.9.peg.1 25 TNQMNIESFL 34 (40) Q Consensus 25 tnqmniesfl 34 (40) +|.|||++.| T Consensus 1 ~n~MnI~~~l 10 (109) T 3gdz_A 1 SNAMNIQALL 10 (109) T ss_dssp CCCCCHHHHH T ss_pred CCCCCHHHHH T ss_conf 9841799999 No 3 >1hcf_A Neurotrophin-4; transferase/hormone, complex(transferase/growth factor), neurotrophin-4/5, TRKB receptor, NGF-beta superfamily; 2.7A {Homo sapiens} SCOP: g.17.1.3 PDB: 1b98_A 1b8m_B Probab=6.11 E-value=1.1e+02 Score=13.83 Aligned_cols=11 Identities=45% Similarity=0.594 Sum_probs=7.7 Q ss_pred ECCEEEEEEEC Q ss_conf 03059999906 Q 537021.9.peg.1 14 EKRQYFFVFND 24 (40) Q Consensus 14 ekrqyffvfnd 24 (40) .++||||+-.= T Consensus 51 ~~kQyFfETrC 61 (130) T 1hcf_A 51 PLRQYFFETRC 61 (130) T ss_dssp EEECCEEEEEE T ss_pred EEEEEEEEEEE T ss_conf 87899999987 No 4 >3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes} Probab=5.61 E-value=1.6e+02 Score=13.13 Aligned_cols=15 Identities=47% Similarity=0.813 Sum_probs=9.3 Q ss_pred CEEEEEEEC--CCCCCH Q ss_conf 059999906--771148 Q 537021.9.peg.1 16 RQYFFVFND--TNQMNI 30 (40) Q Consensus 16 rqyffvfnd--tnqmni 30 (40) ..-||+|.+ |+++|+ T Consensus 26 ~~~f~vF~n~~t~~~nv 42 (57) T 3k2t_A 26 GHSFYVYTDAETNGTNI 42 (57) T ss_dssp TCSEEEEEBSSSCCEEE T ss_pred CCCEEEEEECCCCCEEE T ss_conf 99499999368996989 No 5 >2ox6_A Hypothetical protein SO3848; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 1.70A {Shewanella oneidensis mr-1} SCOP: a.35.1.6 Probab=5.53 E-value=2e+02 Score=12.75 Aligned_cols=24 Identities=42% Similarity=0.445 Sum_probs=20.9 Q ss_pred HHHHHHHHHEEECCEEEEEEECCC Q ss_conf 667666463010305999990677 Q 537021.9.peg.1 3 YDEIEDLFFFREKRQYFFVFNDTN 26 (40) Q Consensus 3 ydeiedlfffrekrqyffvfndtn 26 (40) .|.||.||--..||+.-||.-.|. T Consensus 70 ~dgieelfkkepkr~lsfvvyptq 93 (166) T 2ox6_A 70 TDGIEALFKKEPKRHLAFVVYPTQ 93 (166) T ss_dssp HHHHHHHHTTSCCSEEEEEECSSH T ss_pred CCCHHHHHHHCCCCEEEEEECCHH T ss_conf 420999974184303678972318 No 6 >1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Probab=5.39 E-value=1.8e+02 Score=12.93 Aligned_cols=12 Identities=25% Similarity=0.869 Sum_probs=8.2 Q ss_pred ECCEEEEEEECC Q ss_conf 030599999067 Q 537021.9.peg.1 14 EKRQYFFVFNDT 25 (40) Q Consensus 14 ekrqyffvfndt 25 (40) -|..|||.|+|. T Consensus 44 ~k~R~~fLF~~~ 55 (132) T 1v61_A 44 KEERYFLLFSSV 55 (132) T ss_dssp CCEEEEEECSSC T ss_pred CCEEEEEEECCE T ss_conf 525899996898 No 7 >2kzb_A Autophagy-related protein 19; selective autophagy, ATG19, alpha-mannosidase, protein trans; NMR {Saccharomyces cerevisiae} Probab=5.20 E-value=2.1e+02 Score=12.64 Aligned_cols=16 Identities=44% Similarity=0.864 Sum_probs=12.1 Q ss_pred EECCEEEEEEECCCCC Q ss_conf 1030599999067711 Q 537021.9.peg.1 13 REKRQYFFVFNDTNQM 28 (40) Q Consensus 13 rekrqyffvfndtnqm 28 (40) |...-||-.||.||-. T Consensus 20 rDNSL~F~L~N~TN~i 35 (118) T 2kzb_A 20 RDNSLYFQLFNNTNSV 35 (118) T ss_dssp ETTEEEEEEEECSSSC T ss_pred CCCEEEEEEECCCCEE T ss_conf 7865899995477657 No 8 >2kzk_A Uncharacterized protein YOL083W; selective autophagy, ATG34, alpha-mannosidase, ATG19, protei transport; NMR {Saccharomyces cerevisiae} Probab=4.58 E-value=2.2e+02 Score=12.51 Aligned_cols=14 Identities=29% Similarity=0.605 Sum_probs=0.0 Q ss_pred EECCEEEEEEECCC Q ss_conf 10305999990677 Q 537021.9.peg.1 13 REKRQYFFVFNDTN 26 (40) Q Consensus 13 rekrqyffvfndtn 26 (40) |...-||-.||.|| T Consensus 16 ~DNSL~F~L~N~TN 29 (107) T 2kzk_A 16 EDNSLHFILYNKTN 29 (107) T ss_dssp BTTBCCEEEECCSS T ss_pred CCCEEEEEEECCCC T ss_conf 78748999954776 No 9 >3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum} Probab=4.22 E-value=2.1e+02 Score=12.67 Aligned_cols=12 Identities=50% Similarity=1.187 Sum_probs=0.0 Q ss_pred EEEEEC--CCCCCH Q ss_conf 999906--771148 Q 537021.9.peg.1 19 FFVFND--TNQMNI 30 (40) Q Consensus 19 ffvfnd--tnqmni 30 (40) ||+|.+ |+++|+ T Consensus 29 F~vF~n~~t~~inv 42 (65) T 3ka5_A 29 FFVFQNGDSNEVNV 42 (65) T ss_dssp EEEEEETTTTEEEE T ss_pred EEEEEECCCCCEEE T ss_conf 99996055798888 No 10 >1bnd_A BDNF, brain derived neurotrophic factor; complex (growth factor/growth factor) complex; 2.30A {Homo sapiens} SCOP: g.17.1.3 PDB: 1b8m_A Probab=4.13 E-value=2.3e+02 Score=12.47 Aligned_cols=7 Identities=43% Similarity=1.013 Sum_probs=0.0 Q ss_pred CCEEEEE Q ss_conf 3059999 Q 537021.9.peg.1 15 KRQYFFV 21 (40) Q Consensus 15 krqyffv 21 (40) ++||||. T Consensus 49 ~kQyF~E 55 (119) T 1bnd_A 49 LKQYFYE 55 (119) T ss_dssp EECEEEE T ss_pred EEEEEEE T ss_conf 8999999 Done!