BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.1107_1
         (40 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.1107_1 
          Length = 40

 Score = 81.3 bits (199), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/40 (100%), Positives = 40/40 (100%)

Query: 1  MAYDEIEDLFFFREKRQYFFVFNDTNQMNIESFLWILFMR 40
          MAYDEIEDLFFFREKRQYFFVFNDTNQMNIESFLWILFMR
Sbjct: 1  MAYDEIEDLFFFREKRQYFFVFNDTNQMNIESFLWILFMR 40


>gi|254780166|ref|YP_003064579.1| hydrolase protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 261

 Score = 21.9 bits (45), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 6  IEDLFFFREKRQYFFVFNDTNQMNIESFLWI 36
          + ++ FFR  R+Y F F D    +  + L I
Sbjct: 2  MNEVKFFRSWRKYQFAFYDVGDKDAPTILLI 32


>gi|254780134|ref|YP_003064547.1| phage-related integrase/recombinase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 348

 Score = 21.9 bits (45), Expect = 2.2,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)

Query: 16  RQYFFVFNDTNQMNIESF-LW 35
           ++ FF+ ND  +MN   F +W
Sbjct: 252 KETFFINNDKQKMNATQFSIW 272


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.339    0.148    0.472 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,957
Number of Sequences: 1233
Number of extensions: 579
Number of successful extensions: 3
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 40
length of database: 328,796
effective HSP length: 14
effective length of query: 26
effective length of database: 311,534
effective search space:  8099884
effective search space used:  8099884
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 31 (16.5 bits)