Query 537021.9.peg.1120_1 Match_columns 40 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 08:02:13 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1120.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3n8k_A 3-dehydroquinate dehydr 17.6 23 0.00097 17.1 0.1 23 9-31 44-66 (172) 2 1stz_A Heat-inducible transcri 12.4 20 0.00085 17.3 -1.3 22 1-22 23-44 (338) 3 1gqo_A Dehydroquinase, dhqase; 11.8 42 0.0018 15.9 0.1 23 10-32 17-39 (143) 4 1h05_A 3-dehydroquinate dehydr 10.4 46 0.0019 15.7 -0.1 23 9-31 18-40 (146) 5 1uqr_A 3-dehydroquinate dehydr 9.6 70 0.003 14.9 0.6 25 9-33 17-41 (154) 6 3kip_A 3-dehydroquinase, type 9.5 53 0.0022 15.5 0.0 22 10-31 31-52 (167) 7 1gtz_A 3-dehydroquinate dehydr 9.3 57 0.0024 15.3 0.1 23 9-31 22-44 (156) 8 2nr4_A Conserved hypothetical 9.3 67 0.0028 15.0 0.5 16 13-28 60-75 (213) 9 2uyg_A 3-dehydroquinate dehydr 7.9 58 0.0024 15.3 -0.3 25 9-33 15-39 (149) 10 1ypx_A Putative vitamin-B12 in 7.9 92 0.0039 14.4 0.7 16 3-18 10-25 (375) No 1 >3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A* Probab=17.60 E-value=23 Score=17.07 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=19.0 Q ss_pred CCHHHHHHHHHHHHHHHCCHHHH Q ss_conf 52234544455666653610233 Q 537021.9.peg.1 9 PREKEVVGSRTLRNIEKKPKESS 31 (40) Q Consensus 9 prekevvgsrtlrniekkpkess 31 (40) -||+++-|+.||..|++.-++.. T Consensus 44 ~Rep~iYG~~TL~~i~~~~~~~a 66 (172) T 3n8k_A 44 RREPAVYGGTTHDELVALIEREA 66 (172) T ss_dssp TSCHHHHCSCCHHHHHHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHHH T ss_conf 88887488478999999999999 No 2 >1stz_A Heat-inducible transcription repressor HRCA homolog; circe element, structural genomics, BSGC structure funded by NIH; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3 Probab=12.43 E-value=20 Score=17.34 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=17.2 Q ss_pred CCHHHCCCCCHHHHHHHHHHHH Q ss_conf 9213203852234544455666 Q 537021.9.peg.1 1 LKSIIGNFPREKEVVGSRTLRN 22 (40) Q Consensus 1 lksiignfprekevvgsrtlrn 22 (40) |+.||-.|-+..+-|||+||.. T Consensus 23 L~aiVe~Yi~t~~PVGSk~L~~ 44 (338) T 1stz_A 23 LYCIVREYIENKKPVSSQRVLE 44 (338) T ss_dssp HHHHHHHHHHHCSCBCHHHHHH T ss_pred HHHHHHHHHHCCCCCCHHHHHH T ss_conf 9999999984398367899998 No 3 >1gqo_A Dehydroquinase, dhqase; dehydratase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1 Probab=11.75 E-value=42 Score=15.92 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=19.4 Q ss_pred CHHHHHHHHHHHHHHHCCHHHHH Q ss_conf 22345444556666536102333 Q 537021.9.peg.1 10 REKEVVGSRTLRNIEKKPKESST 32 (40) Q Consensus 10 rekevvgsrtlrniekkpkesst 32 (40) ||+++-|+.||..|++.-++... T Consensus 17 Re~~iYG~~TL~~i~~~~~~~a~ 39 (143) T 1gqo_A 17 REPEVFGRQTLTDIETDLFQFAE 39 (143) T ss_dssp SCHHHHCSCCHHHHHHHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHHHHHH T ss_conf 78974886599999999999999 No 4 >1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A Probab=10.36 E-value=46 Score=15.74 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=19.2 Q ss_pred CCHHHHHHHHHHHHHHHCCHHHH Q ss_conf 52234544455666653610233 Q 537021.9.peg.1 9 PREKEVVGSRTLRNIEKKPKESS 31 (40) Q Consensus 9 prekevvgsrtlrniekkpkess 31 (40) -||+++-|+.||..|+++-++.. T Consensus 18 ~Rep~iYG~~tl~~i~~~~~~~a 40 (146) T 1h05_A 18 RREPAVYGGTTHDELVALIEREA 40 (146) T ss_dssp TC------CCCHHHHHHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHHH T ss_conf 88887378478999999999999 No 5 >1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1 Probab=9.56 E-value=70 Score=14.91 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=20.2 Q ss_pred CCHHHHHHHHHHHHHHHCCHHHHHH Q ss_conf 5223454445566665361023333 Q 537021.9.peg.1 9 PREKEVVGSRTLRNIEKKPKESSTR 33 (40) Q Consensus 9 prekevvgsrtlrniekkpkesstr 33 (40) -||.++-|+.||..|++.-++.... T Consensus 17 ~Re~~iYG~~TL~~i~~~l~~~a~~ 41 (154) T 1uqr_A 17 KREPHIYGSQTLSDIEQHLQQSAQA 41 (154) T ss_dssp CSSGGGTTCCCHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 8899768855899999999999997 No 6 >3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans} Probab=9.48 E-value=53 Score=15.45 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=18.5 Q ss_pred CHHHHHHHHHHHHHHHCCHHHH Q ss_conf 2234544455666653610233 Q 537021.9.peg.1 10 REKEVVGSRTLRNIEKKPKESS 31 (40) Q Consensus 10 rekevvgsrtlrniekkpkess 31 (40) ||+++-|+.||..|++.-++.. T Consensus 31 Re~~iYG~~TL~~i~~~~~~~a 52 (167) T 3kip_A 31 REPEKYGTTSLSDIEQAAIEQA 52 (167) T ss_dssp C----CCSCCHHHHHHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHHHHH T ss_conf 7887578468999999999999 No 7 >1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A* Probab=9.33 E-value=57 Score=15.31 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=18.8 Q ss_pred CCHHHHHHHHHHHHHHHCCHHHH Q ss_conf 52234544455666653610233 Q 537021.9.peg.1 9 PREKEVVGSRTLRNIEKKPKESS 31 (40) Q Consensus 9 prekevvgsrtlrniekkpkess 31 (40) -||.++-|+.||..|++.-++.. T Consensus 22 ~Rep~iYG~~tL~~i~~~~~~~a 44 (156) T 1gtz_A 22 QAQPEIYGSDTLADVEALCVKAA 44 (156) T ss_dssp TSCHHHHCSCCHHHHHHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHHH T ss_conf 88987288569999999999999 No 8 >2nr4_A Conserved hypothetical protein; structural genomics, unknown function, flavoprotein, PSI-2, protein structure initiative; HET: FMN; 1.85A {Methanosarcina mazei} SCOP: b.45.1.4 Probab=9.27 E-value=67 Score=14.99 Aligned_cols=16 Identities=31% Similarity=0.258 Sum_probs=11.3 Q ss_pred HHHHHHHHHHHHHCCH Q ss_conf 4544455666653610 Q 537021.9.peg.1 13 EVVGSRTLRNIEKKPK 28 (40) Q Consensus 13 evvgsrtlrniekkpk 28 (40) ---||+|++||...+. T Consensus 60 ~f~gS~T~~Nl~~~g~ 75 (213) T 2nr4_A 60 LFKGSHTWENVLKEKC 75 (213) T ss_dssp EETTSHHHHHHHHHCE T ss_pred ECCCCCHHHHHHHCCE T ss_conf 7389637899874694 No 9 >2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus} Probab=7.92 E-value=58 Score=15.28 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=20.1 Q ss_pred CCHHHHHHHHHHHHHHHCCHHHHHH Q ss_conf 5223454445566665361023333 Q 537021.9.peg.1 9 PREKEVVGSRTLRNIEKKPKESSTR 33 (40) Q Consensus 9 prekevvgsrtlrniekkpkesstr 33 (40) -||.++-|+.||..|++.-++.... T Consensus 15 ~Rep~iYG~~tL~~i~~~~~~~a~~ 39 (149) T 2uyg_A 15 RREPEVYGRTTLEELEALCEAWGAE 39 (149) T ss_dssp TSCSSSSCSCCHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 8789747756999999999999997 No 10 >1ypx_A Putative vitamin-B12 independent methionine synthase family protein; alpha-beta protein, whose fold resembles A TIM-barrel protein; 2.60A {Listeria monocytogenes egd-e} Probab=7.92 E-value=92 Score=14.38 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=12.5 Q ss_pred HHHCCCCCHHHHHHHH Q ss_conf 1320385223454445 Q 537021.9.peg.1 3 SIIGNFPREKEVVGSR 18 (40) Q Consensus 3 siignfprekevvgsr 18 (40) ++||.|||-+|..-.+ T Consensus 10 ~~vGS~Prp~eLk~a~ 25 (375) T 1ypx_A 10 DHVGSILRTKGIKDAR 25 (375) T ss_dssp CCCSCCCCCHHHHHHH T ss_pred CCCCCCCCCHHHHHHH T ss_conf 5014789999999999 Done!