Query 537021.9.peg.1120_1
Match_columns 40
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed May 25 08:02:13 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1120.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n8k_A 3-dehydroquinate dehydr 17.6 23 0.00097 17.1 0.1 23 9-31 44-66 (172)
2 1stz_A Heat-inducible transcri 12.4 20 0.00085 17.3 -1.3 22 1-22 23-44 (338)
3 1gqo_A Dehydroquinase, dhqase; 11.8 42 0.0018 15.9 0.1 23 10-32 17-39 (143)
4 1h05_A 3-dehydroquinate dehydr 10.4 46 0.0019 15.7 -0.1 23 9-31 18-40 (146)
5 1uqr_A 3-dehydroquinate dehydr 9.6 70 0.003 14.9 0.6 25 9-33 17-41 (154)
6 3kip_A 3-dehydroquinase, type 9.5 53 0.0022 15.5 0.0 22 10-31 31-52 (167)
7 1gtz_A 3-dehydroquinate dehydr 9.3 57 0.0024 15.3 0.1 23 9-31 22-44 (156)
8 2nr4_A Conserved hypothetical 9.3 67 0.0028 15.0 0.5 16 13-28 60-75 (213)
9 2uyg_A 3-dehydroquinate dehydr 7.9 58 0.0024 15.3 -0.3 25 9-33 15-39 (149)
10 1ypx_A Putative vitamin-B12 in 7.9 92 0.0039 14.4 0.7 16 3-18 10-25 (375)
No 1
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=17.60 E-value=23 Score=17.07 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 52234544455666653610233
Q 537021.9.peg.1 9 PREKEVVGSRTLRNIEKKPKESS 31 (40)
Q Consensus 9 prekevvgsrtlrniekkpkess 31 (40)
-||+++-|+.||..|++.-++..
T Consensus 44 ~Rep~iYG~~TL~~i~~~~~~~a 66 (172)
T 3n8k_A 44 RREPAVYGGTTHDELVALIEREA 66 (172)
T ss_dssp TSCHHHHCSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 88887488478999999999999
No 2
>1stz_A Heat-inducible transcription repressor HRCA homolog; circe element, structural genomics, BSGC structure funded by NIH; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=12.43 E-value=20 Score=17.34 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=17.2
Q ss_pred CCHHHCCCCCHHHHHHHHHHHH
Q ss_conf 9213203852234544455666
Q 537021.9.peg.1 1 LKSIIGNFPREKEVVGSRTLRN 22 (40)
Q Consensus 1 lksiignfprekevvgsrtlrn 22 (40)
|+.||-.|-+..+-|||+||..
T Consensus 23 L~aiVe~Yi~t~~PVGSk~L~~ 44 (338)
T 1stz_A 23 LYCIVREYIENKKPVSSQRVLE 44 (338)
T ss_dssp HHHHHHHHHHHCSCBCHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHH
T ss_conf 9999999984398367899998
No 3
>1gqo_A Dehydroquinase, dhqase; dehydratase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=11.75 E-value=42 Score=15.92 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 22345444556666536102333
Q 537021.9.peg.1 10 REKEVVGSRTLRNIEKKPKESST 32 (40)
Q Consensus 10 rekevvgsrtlrniekkpkesst 32 (40)
||+++-|+.||..|++.-++...
T Consensus 17 Re~~iYG~~TL~~i~~~~~~~a~ 39 (143)
T 1gqo_A 17 REPEVFGRQTLTDIETDLFQFAE 39 (143)
T ss_dssp SCHHHHCSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 78974886599999999999999
No 4
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A
Probab=10.36 E-value=46 Score=15.74 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 52234544455666653610233
Q 537021.9.peg.1 9 PREKEVVGSRTLRNIEKKPKESS 31 (40)
Q Consensus 9 prekevvgsrtlrniekkpkess 31 (40)
-||+++-|+.||..|+++-++..
T Consensus 18 ~Rep~iYG~~tl~~i~~~~~~~a 40 (146)
T 1h05_A 18 RREPAVYGGTTHDELVALIEREA 40 (146)
T ss_dssp TC------CCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 88887378478999999999999
No 5
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=9.56 E-value=70 Score=14.91 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 5223454445566665361023333
Q 537021.9.peg.1 9 PREKEVVGSRTLRNIEKKPKESSTR 33 (40)
Q Consensus 9 prekevvgsrtlrniekkpkesstr 33 (40)
-||.++-|+.||..|++.-++....
T Consensus 17 ~Re~~iYG~~TL~~i~~~l~~~a~~ 41 (154)
T 1uqr_A 17 KREPHIYGSQTLSDIEQHLQQSAQA 41 (154)
T ss_dssp CSSGGGTTCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 8899768855899999999999997
No 6
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=9.48 E-value=53 Score=15.45 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 2234544455666653610233
Q 537021.9.peg.1 10 REKEVVGSRTLRNIEKKPKESS 31 (40)
Q Consensus 10 rekevvgsrtlrniekkpkess 31 (40)
||+++-|+.||..|++.-++..
T Consensus 31 Re~~iYG~~TL~~i~~~~~~~a 52 (167)
T 3kip_A 31 REPEKYGTTSLSDIEQAAIEQA 52 (167)
T ss_dssp C----CCSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHH
T ss_conf 7887578468999999999999
No 7
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=9.33 E-value=57 Score=15.31 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 52234544455666653610233
Q 537021.9.peg.1 9 PREKEVVGSRTLRNIEKKPKESS 31 (40)
Q Consensus 9 prekevvgsrtlrniekkpkess 31 (40)
-||.++-|+.||..|++.-++..
T Consensus 22 ~Rep~iYG~~tL~~i~~~~~~~a 44 (156)
T 1gtz_A 22 QAQPEIYGSDTLADVEALCVKAA 44 (156)
T ss_dssp TSCHHHHCSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 88987288569999999999999
No 8
>2nr4_A Conserved hypothetical protein; structural genomics, unknown function, flavoprotein, PSI-2, protein structure initiative; HET: FMN; 1.85A {Methanosarcina mazei} SCOP: b.45.1.4
Probab=9.27 E-value=67 Score=14.99 Aligned_cols=16 Identities=31% Similarity=0.258 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHCCH
Q ss_conf 4544455666653610
Q 537021.9.peg.1 13 EVVGSRTLRNIEKKPK 28 (40)
Q Consensus 13 evvgsrtlrniekkpk 28 (40)
---||+|++||...+.
T Consensus 60 ~f~gS~T~~Nl~~~g~ 75 (213)
T 2nr4_A 60 LFKGSHTWENVLKEKC 75 (213)
T ss_dssp EETTSHHHHHHHHHCE
T ss_pred ECCCCCHHHHHHHCCE
T ss_conf 7389637899874694
No 9
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=7.92 E-value=58 Score=15.28 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 5223454445566665361023333
Q 537021.9.peg.1 9 PREKEVVGSRTLRNIEKKPKESSTR 33 (40)
Q Consensus 9 prekevvgsrtlrniekkpkesstr 33 (40)
-||.++-|+.||..|++.-++....
T Consensus 15 ~Rep~iYG~~tL~~i~~~~~~~a~~ 39 (149)
T 2uyg_A 15 RREPEVYGRTTLEELEALCEAWGAE 39 (149)
T ss_dssp TSCSSSSCSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 8789747756999999999999997
No 10
>1ypx_A Putative vitamin-B12 independent methionine synthase family protein; alpha-beta protein, whose fold resembles A TIM-barrel protein; 2.60A {Listeria monocytogenes egd-e}
Probab=7.92 E-value=92 Score=14.38 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=12.5
Q ss_pred HHHCCCCCHHHHHHHH
Q ss_conf 1320385223454445
Q 537021.9.peg.1 3 SIIGNFPREKEVVGSR 18 (40)
Q Consensus 3 siignfprekevvgsr 18 (40)
++||.|||-+|..-.+
T Consensus 10 ~~vGS~Prp~eLk~a~ 25 (375)
T 1ypx_A 10 DHVGSILRTKGIKDAR 25 (375)
T ss_dssp CCCSCCCCCHHHHHHH
T ss_pred CCCCCCCCCHHHHHHH
T ss_conf 5014789999999999
Done!