RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= 537021.9.peg.1120_1
         (40 letters)



>1gtz_A 3-dehydroquinate dehydratase; lyase, type II
          dehydroquinase, shikimate pathway, dodecameric
          quaternary structure; HET: DHK; 1.6A {Streptomyces
          coelicolor} (A:)
          Length = 156

 Score = 24.6 bits (54), Expect = 4.5
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 10 REKEVVGSRTLRNIEKKPKE 29
           + E+ GS TL ++E    +
Sbjct: 23 AQPEIYGSDTLADVEALCVK 42


>1h05_A 3-dehydroquinate dehydratase; shikimate pathway,
          alpha/beta protein, lyase, aromatic amino acid
          biosynthesis; 1.5A {Mycobacterium tuberculosis} (A:)
          Length = 146

 Score = 24.2 bits (53), Expect = 6.4
 Identities = 5/17 (29%), Positives = 6/17 (35%)

Query: 10 REKEVVGSRTLRNIEKK 26
          RE  V G  T   +   
Sbjct: 19 REPAVYGGTTHDELVAL 35


>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase,
          lyase; 2.2A {Thermus thermophilus} (A:)
          Length = 149

 Score = 23.8 bits (52), Expect = 7.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)

Query: 10 REKEVVGSRTLRNIEKK 26
          RE EV G  TL  +E  
Sbjct: 16 REPEVYGRTTLEELEAL 32


>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic
          amino acid biosynthesis, lyase; 1.7A {Actinobacillus
          pleuropneumoniae} (A:)
          Length = 154

 Score = 23.8 bits (52), Expect = 8.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 10 REKEVVGSRTLRNIEKK 26
          RE  + GS+TL +IE+ 
Sbjct: 18 REPHIYGSQTLSDIEQH 34


>1gqo_A Dehydroquinase, dhqase; dehydratase; 2.10A {Bacillus
          subtilis} (A:)
          Length = 143

 Score = 23.8 bits (52), Expect = 8.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 10 REKEVVGSRTLRNIEKK 26
          RE EV G +TL +IE  
Sbjct: 17 REPEVFGRQTLTDIETD 33


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.304    0.125    0.320 

Gapped
Lambda     K      H
   0.267   0.0733    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 232,397
Number of extensions: 4630
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 5
Length of query: 40
Length of database: 4,956,049
Length adjustment: 13
Effective length of query: 27
Effective length of database: 4,516,584
Effective search space: 121947768
Effective search space used: 121947768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 50 (23.0 bits)