RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.1120_1
         (40 letters)



>1stz_A Heat-inducible transcription repressor HRCA homolog; circe
          element, structural genomics, BSGC structure funded by
          NIH; 2.20A {Thermotoga maritima} SCOP: a.4.5.51
          d.110.2.3
          Length = 338

 Score = 24.0 bits (51), Expect = 8.7
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 1  LKSIIGNFPREKEVVGSRTL 20
          L  I+  +   K+ V S+ +
Sbjct: 23 LYCIVREYIENKKPVSSQRV 42


>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta
          protein, lyase, aromatic amino acid biosynthesis; 1.5A
          {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB:
          1h0r_A* 1h0s_A* 2dhq_A
          Length = 146

 Score = 23.9 bits (52), Expect = 9.3
 Identities = 5/17 (29%), Positives = 6/17 (35%)

Query: 10 REKEVVGSRTLRNIEKK 26
          RE  V G  T   +   
Sbjct: 19 REPAVYGGTTHDELVAL 35


>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase,
          shikimate pathway, dodecameric quaternary structure;
          HET: DHK; 1.6A {Streptomyces coelicolor} SCOP:
          c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A
          1gu1_A*
          Length = 156

 Score = 24.0 bits (52), Expect = 9.6
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 10 REKEVVGSRTLRNIEKK 26
           + E+ GS TL ++E  
Sbjct: 23 AQPEIYGSDTLADVEAL 39


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.304    0.125    0.320 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 275,800
Number of extensions: 5956
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 4
Length of query: 40
Length of database: 5,693,230
Length adjustment: 14
Effective length of query: 26
Effective length of database: 5,353,814
Effective search space: 139199164
Effective search space used: 139199164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 50 (23.3 bits)