RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.1120_1
         (40 letters)



>d2c4va1 c.23.13.1 (A:1-158) Type II 3-dehydroquinate dehydratase
          {Helicobacter pylori [TaxId: 210]}
          Length = 158

 Score = 22.5 bits (48), Expect = 9.4
 Identities = 5/17 (29%), Positives = 8/17 (47%)

Query: 10 REKEVVGSRTLRNIEKK 26
          R+  + G  TL  I + 
Sbjct: 17 RDPRLYGMVTLDQIHEI 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.304    0.125    0.320 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 117,975
Number of extensions: 2438
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 4
Length of query: 40
Length of database: 2,407,596
Length adjustment: 13
Effective length of query: 27
Effective length of database: 2,229,106
Effective search space: 60185862
Effective search space used: 60185862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 47 (22.1 bits)