Query 537021.9.peg.1123_1
Match_columns 48
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed May 25 06:43:23 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1123.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2fsj_A Hypothetical protein T 25.9 33 0.00098 16.9 1.5 15 24-38 4-18 (68)
2 >2hma_A Probable tRNA (5-methy 17.5 55 0.0016 15.9 1.2 21 27-47 22-51 (66)
3 >1u6z_A Exopolyphosphatase; al 11.5 1.1E+02 0.0033 14.4 1.5 21 19-39 93-113 (117)
4 >3icx_A PRE mRNA splicing prot 11.2 55 0.0016 15.9 -0.2 29 15-43 14-43 (106)
5 >3esg_A HUTD, putative unchara 10.1 1.2E+02 0.0036 14.3 1.2 10 38-47 76-85 (88)
6 >2der_A TRNA-specific 2-thiour 10.0 1.3E+02 0.0039 14.1 1.4 22 27-48 21-51 (65)
7 >3id5_A NOP5, PRE mRNA splicin 10.0 55 0.0016 15.9 -0.6 29 15-43 14-43 (106)
8 >1kk1_A EIF2gamma; initiation 8.7 21 0.00063 17.8 -3.1 24 19-42 68-91 (94)
9 >2ozb_B U4/U6 small nuclear ri 7.8 69 0.002 15.4 -0.8 28 15-42 10-38 (93)
10 >1t6c_A Exopolyphosphatase; al 7.3 2.1E+02 0.0063 13.1 1.8 19 19-37 94-112 (153)
No 1
>>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural protein; 1.90A {Thermoplasma acidophilum dsm 1728} (A:227-294)
Probab=25.87 E-value=33 Score=16.92 Aligned_cols=15 Identities=47% Similarity=0.760 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHCCE
Q ss_conf 689998754430620
Q 537021.9.peg.1 24 RSAISRRIGQRTGII 38 (48)
Q Consensus 24 rsaisrrigqrtgii 38 (48)
-|+.||.||..||..
T Consensus 4 is~~s~~i~k~tgfv 18 (68)
T 2fsj_A 4 ISALSRKIAKETGFV 18 (68)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999987753
No 2
>>2hma_A Probable tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae} (A:219-284)
Probab=17.46 E-value=55 Score=15.89 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=15.0
Q ss_pred HHHHHHHHHCCE---------EEEEEEEEC
Q ss_conf 998754430620---------224788740
Q 537021.9.peg.1 27 ISRRIGQRTGII---------HDCYVIEFD 47 (48)
Q Consensus 27 isrrigqrtgii---------hdcyviefd 47 (48)
..--||||.||= .-.||++-|
T Consensus 22 ~~yTIGQRkGlgi~~~~~~~~~p~yV~~kd 51 (66)
T 2hma_A 22 XYYTIGQRGGLGIGGQHGGDNAPWFVVGKD 51 (66)
T ss_dssp GGCCTTCBSCTTTTC----CCSCEEEEEEE
T ss_pred EEEEECCCCCCCEECCCCCCCCCCEEEEEE
T ss_conf 898205667752122555678861566540
No 3
>>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, actin) superfamily; 1.90A {Escherichia coli} (A:1-117)
Probab=11.54 E-value=1.1e+02 Score=14.41 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHCCEE
Q ss_conf 012216899987544306202
Q 537021.9.peg.1 19 REKRNRSAISRRIGQRTGIIH 39 (48)
Q Consensus 19 rekrnrsaisrrigqrtgiih 39 (48)
|+-.|+..+-.+|-++||+--
T Consensus 93 R~A~N~~~~~~~i~~~tGl~i 113 (117)
T 1u6z_A 93 RQALNATDFLKRAEKVIPYPI 113 (117)
T ss_dssp HHCTTHHHHHHHHTTTCSSCE
T ss_pred HCCCCHHHHHHHHHHHHCCCE
T ss_conf 849089999999999859968
No 4
>>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding protein; 3.10A {Sulfolobus solfataricus} (A:150-255)
Probab=11.18 E-value=55 Score=15.89 Aligned_cols=29 Identities=28% Similarity=0.238 Sum_probs=22.1
Q ss_pred HHHCHHHHHHHHHHHHHHHH-HCCEEEEEE
Q ss_conf 64220122168999875443-062022478
Q 537021.9.peg.1 15 SLLGREKRNRSAISRRIGQR-TGIIHDCYV 43 (48)
Q Consensus 15 sllgrekrnrsaisrrigqr-tgiihdcyv 43 (48)
.+||.||.+-++++.+-+.+ +|+|-.|-.
T Consensus 14 q~lGa~K~~~~~l~~~~~~pk~G~i~~~~l 43 (106)
T 3icx_A 14 QVLGAEKALFRALRSGGRPPKHGIIFQYPA 43 (106)
T ss_dssp TTCC-------------------GGGGSHH
T ss_pred HHHCHHHHHHHHHCCCCCCCCEEEEECCHH
T ss_conf 987602477876535799998258861854
No 5
>>3esg_A HUTD, putative uncharacterized protein; beta barrel, unknown function; 1.80A {Pseudomonas fluorescens} (A:1-17,A:123-193)
Probab=10.05 E-value=1.2e+02 Score=14.27 Aligned_cols=10 Identities=30% Similarity=0.670 Sum_probs=7.2
Q ss_pred EEEEEEEEEC
Q ss_conf 0224788740
Q 537021.9.peg.1 38 IHDCYVIEFD 47 (48)
Q Consensus 38 ihdcyviefd 47 (48)
--+|||||..
T Consensus 76 ~g~cCvIEL~ 85 (88)
T 3esg_A 76 TGRCCLIELT 85 (88)
T ss_dssp ESSEEEEEEE
T ss_pred CCCEEEEEEE
T ss_conf 7419999999
No 6
>>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* (A:228-292)
Probab=10.02 E-value=1.3e+02 Score=14.07 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=15.0
Q ss_pred HHHHHHHHHCCE---------EEEEEEEECC
Q ss_conf 998754430620---------2247887409
Q 537021.9.peg.1 27 ISRRIGQRTGII---------HDCYVIEFDL 48 (48)
Q Consensus 27 isrrigqrtgii---------hdcyviefdl 48 (48)
..--||||.||- .-.||++-|.
T Consensus 21 ~~yTIGQRkglgi~~~~~~~~~p~yVv~kd~ 51 (65)
T 2der_A 21 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDV 51 (65)
T ss_dssp TTCCTTCCTTSCCCCCSSSTTCCEEEEEEET
T ss_pred EEEECCCCCEEEEECCCCCCCCEEEEEEECC
T ss_conf 8887577623454115887652489999847
No 7
>>3id5_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransferase, RNA-binding, rRNA processing, transferase; HET: SAM; 4.01A {Sulfolobus solfataricus} (A:283-388)
Probab=9.96 E-value=55 Score=15.89 Aligned_cols=29 Identities=28% Similarity=0.238 Sum_probs=22.2
Q ss_pred HHHCHHHHHHHHHHHHHHHH-HCCEEEEEE
Q ss_conf 64220122168999875443-062022478
Q 537021.9.peg.1 15 SLLGREKRNRSAISRRIGQR-TGIIHDCYV 43 (48)
Q Consensus 15 sllgrekrnrsaisrrigqr-tgiihdcyv 43 (48)
.+||.||.+-++++.+-+.+ +|+|-.|-.
T Consensus 14 q~lGa~K~~~~~l~~~~~~pk~G~i~~~~l 43 (106)
T 3id5_A 14 QVLGAEKALFRALRSGGRPPKHGIIFQYPA 43 (106)
T ss_dssp HTTTCTTTTTC------CCSCSCGGGGSHH
T ss_pred HHHCCCHHHHHHHHCCCCCCCCEEEECCHH
T ss_conf 886623055676614899998249973876
No 8
>>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} (A:317-410)
Probab=8.69 E-value=21 Score=17.82 Aligned_cols=24 Identities=42% Similarity=0.459 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 012216899987544306202247
Q 537021.9.peg.1 19 REKRNRSAISRRIGQRTGIIHDCY 42 (48)
Q Consensus 19 rekrnrsaisrrigqrtgiihdcy 42 (48)
-++-.|-||||||++|--+|.-..
T Consensus 68 a~~g~riAiSRrI~~rWRLIG~G~ 91 (94)
T 1kk1_A 68 AEPGDRVAISRQIGSRWRLIGYGI 91 (94)
T ss_dssp CCTTCEEEEEEEETTEEEEEEEEE
T ss_pred ECCCCEEEEEECCCCCCEEEEEEE
T ss_conf 377999999956899757999999
No 9
>>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE- mRNA splicing, U4/U6 DI-snRNA; 2.60A {Homo sapiens} (B:168-260)
Probab=7.81 E-value=69 Score=15.43 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=20.3
Q ss_pred HHHCHHHHHHHHHHHHHHHH-HCCEEEEE
Q ss_conf 64220122168999875443-06202247
Q 537021.9.peg.1 15 SLLGREKRNRSAISRRIGQR-TGIIHDCY 42 (48)
Q Consensus 15 sllgrekrnrsaisrrigqr-tgiihdcy 42 (48)
-+||.||.+-++++.+-+.+ +|+|-.|-
T Consensus 10 qvLGa~K~~~~~l~~~~~~pk~G~i~~~~ 38 (93)
T 2ozb_B 10 MLLGAQRKTLSGFSSTSVLPHTGYIYHSD 38 (93)
T ss_dssp TTTTCC----------CCCTTCCTTTTSH
T ss_pred HHHCCCHHHHHHHHCCCCCCCCCEEECCH
T ss_conf 98640425567760479999977465488
No 10
>>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus VF5} (A:1-136,A:299-315)
Probab=7.31 E-value=2.1e+02 Score=13.10 Aligned_cols=19 Identities=21% Similarity=0.494 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHCC
Q ss_conf 0122168999875443062
Q 537021.9.peg.1 19 REKRNRSAISRRIGQRTGI 37 (48)
Q Consensus 19 rekrnrsaisrrigqrtgi 37 (48)
|+-.|+..+-.+|-++||+
T Consensus 94 R~A~N~~e~l~~I~~~tGi 112 (153)
T 1t6c_A 94 RRAKNAEEFLERVKREVGL 112 (153)
T ss_dssp HTSTTHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHCC
T ss_conf 9734159999999998699
Done!