Query 537021.9.peg.1123_1 Match_columns 48 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 07:22:48 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1123.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2knr_A Uncharacterized protein 5.0 2.1E+02 0.0088 12.4 1.7 25 23-47 81-105 (121) 2 2kd2_A FAS apoptotic inhibitor 4.1 2.3E+02 0.0098 12.2 0.9 11 33-43 74-84 (94) 3 2hma_A Probable tRNA (5-methyl 3.8 2.7E+02 0.011 11.9 1.2 22 26-47 239-269 (376) 4 2der_A TRNA-specific 2-thiouri 3.1 3.2E+02 0.013 11.6 1.3 20 28-47 249-277 (380) 5 3iv4_A Putative oxidoreductase 3.1 3.2E+02 0.013 11.6 1.4 17 25-41 66-82 (112) 6 3mdq_A Exopolyphosphatase; str 2.9 3.3E+02 0.014 11.5 1.7 20 19-38 86-105 (315) 7 2r9i_A Putative phage capsid p 2.8 3E+02 0.013 11.7 0.4 15 19-33 78-92 (141) 8 2ywe_A GTP-binding protein LEP 2.7 2.6E+02 0.011 11.9 0.0 29 10-38 4-33 (600) 9 1tsk_A TS KAPA; scorpion, toxi 2.6 1.7E+02 0.0071 12.9 -1.1 12 25-36 15-26 (35) 10 1te7_A Hypothetical UPF0267 pr 2.5 3.7E+02 0.016 11.2 1.2 7 42-48 96-102 (103) No 1 >2knr_A Uncharacterized protein ATC0905; methods development, structural genomics, protein northeast structural genomics consortium (NESG); NMR {Agrobacterium tumefaciens str} Probab=4.99 E-value=2.1e+02 Score=12.41 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=20.3 Q ss_pred HHHHHHHHHHHHHCCEEEEEEEEEC Q ss_conf 1689998754430620224788740 Q 537021.9.peg.1 23 NRSAISRRIGQRTGIIHDCYVIEFD 47 (48) Q Consensus 23 nrsaisrrigqrtgiihdcyviefd 47 (48) ....+..+|-.+..+=-||+|+|.+ T Consensus 81 ~e~eid~~l~re~~~DPDlWVVEiE 105 (121) T 2knr_A 81 EGEEIAALLERERRFDSDLWVVEIE 105 (121) T ss_dssp CHHHHHHHHHHHHHHCTTCEEEEEE T ss_pred CHHHHHHHHHHHHCCCCCEEEEEEE T ss_conf 9899999999986469980799996 No 2 >2kd2_A FAS apoptotic inhibitory molecule 1; protein, beta sandwich, apoptosis; NMR {Mus musculus} Probab=4.10 E-value=2.3e+02 Score=12.20 Aligned_cols=11 Identities=45% Similarity=0.785 Sum_probs=8.1 Q ss_pred HHHCCEEEEEE Q ss_conf 43062022478 Q 537021.9.peg.1 33 QRTGIIHDCYV 43 (48) Q Consensus 33 qrtgiihdcyv 43 (48) .|.||||.-|| T Consensus 74 kr~GIvHsL~V 84 (94) T 2kd2_A 74 RKEGIIHTLIV 84 (94) T ss_dssp SSSEEEEEEEE T ss_pred CCCCEEEEEEE T ss_conf 73558999999 No 3 >2hma_A Probable tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae} Probab=3.77 E-value=2.7e+02 Score=11.92 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=12.1 Q ss_pred HHHHHHHHHHCCE---------EEEEEEEEC Q ss_conf 9998754430620---------224788740 Q 537021.9.peg.1 26 AISRRIGQRTGII---------HDCYVIEFD 47 (48) Q Consensus 26 aisrrigqrtgii---------hdcyviefd 47 (48) ...-.||||-|+- --.||++.| T Consensus 239 ~~~yTiGQRkGlgi~~~~~~~~~p~yV~~~d 269 (376) T 2hma_A 239 LMYYTIGQRGGLGIGGQHGGDNAPWFVVGKD 269 (376) T ss_dssp GGGCCTTCBSCTTTTC----CCSCEEEEEEE T ss_pred EEEECCCCCCCCCCCCCCCCCCCCEEEEEEC T ss_conf 6676346546544346667778736998612 No 4 >2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* Probab=3.07 E-value=3.2e+02 Score=11.57 Aligned_cols=20 Identities=35% Similarity=0.580 Sum_probs=11.8 Q ss_pred HHHHHHHHCCEE---------EEEEEEEC Q ss_conf 987544306202---------24788740 Q 537021.9.peg.1 28 SRRIGQRTGIIH---------DCYVIEFD 47 (48) Q Consensus 28 srrigqrtgiih---------dcyviefd 47 (48) .-.||||-|+-- -.||++.| T Consensus 249 ~yTiGQRkGLgi~~~~~~~~~p~yVv~~d 277 (380) T 2der_A 249 YHTLGQRKGLGIGGTKEGTEEPWYVVDKD 277 (380) T ss_dssp TCCTTCCTTSCCCCCSSSTTCCEEEEEEE T ss_pred EEECCCCCCCCCCCCCCCCCCCEEEEEEC T ss_conf 88756776334467787776633999872 No 5 >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, thioredoxin fold, structural genomics, PSI- 2; HET: MSE; 1.50A {Staphylococcus aureus subsp} Probab=3.06 E-value=3.2e+02 Score=11.57 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=14.3 Q ss_pred HHHHHHHHHHHCCEEEE Q ss_conf 89998754430620224 Q 537021.9.peg.1 25 SAISRRIGQRTGIIHDC 41 (48) Q Consensus 25 saisrrigqrtgiihdc 41 (48) -.+|..|..++|+.|.- T Consensus 66 R~vSn~IAe~~~V~HES 82 (112) T 3iv4_A 66 RDLSDYIAKKTNVKHES 82 (112) T ss_dssp HHHHHHHHHHHTCCCCS T ss_pred CHHHHHHHHHHCCCCCC T ss_conf 65789999995996689 No 6 >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} Probab=2.90 E-value=3.3e+02 Score=11.47 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=13.1 Q ss_pred HHHHHHHHHHHHHHHHHCCE Q ss_conf 01221689998754430620 Q 537021.9.peg.1 19 REKRNRSAISRRIGQRTGII 38 (48) Q Consensus 19 rekrnrsaisrrigqrtgii 38 (48) |+-.|+..+-.+|-++||+- T Consensus 86 R~A~N~~~~~~~i~~~tGi~ 105 (315) T 3mdq_A 86 RSGSNKQVLIDRIKKEVNID 105 (315) T ss_dssp HHCTTHHHHHHHHHHHHCCC T ss_pred HHCCCHHHHHHHHHHHHCCC T ss_conf 96647388999999985998 No 7 >2r9i_A Putative phage capsid protein; putative phage capsid domain, protein structure initiative, structural genomics; 2.60A {Corynebacterium diphtheriae NCTC13129} Probab=2.78 E-value=3e+02 Score=11.65 Aligned_cols=15 Identities=47% Similarity=0.656 Sum_probs=8.7 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 012216899987544 Q 537021.9.peg.1 19 REKRNRSAISRRIGQ 33 (48) Q Consensus 19 rekrnrsaisrrigq 33 (48) |...|.||-+|-+|. T Consensus 78 rgtendsA~~RSLGE 92 (141) T 2r9i_A 78 RGTENDSAASRSLGE 92 (141) T ss_dssp --------------- T ss_pred CCCCCCCCCCCHHHH T ss_conf 466676635312789 No 8 >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural genomics, NPPSFA; 2.05A {Aquifex aeolicus VF5} PDB: 2ywf_A* 2ywg_A* 2ywh_A* Probab=2.68 E-value=2.6e+02 Score=11.94 Aligned_cols=29 Identities=31% Similarity=0.568 Sum_probs=10.7 Q ss_pred HHHHH-HHHCHHHHHHHHHHHHHHHHHCCE Q ss_conf 88767-642201221689998754430620 Q 537021.9.peg.1 10 KNIRN-SLLGREKRNRSAISRRIGQRTGII 38 (48) Q Consensus 10 knirn-sllgrekrnrsaisrrigqrtgii 38 (48) ||||| +++|.-....|..+-++=..+|.+ T Consensus 4 ~~IRNiaIiaHvdhGKTTL~d~lL~~tg~i 33 (600) T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAI 33 (600) T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC- T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCC T ss_conf 477789998578979999999999971999 No 9 >1tsk_A TS KAPA; scorpion, toxin, potassium channel, neurotoxin; NMR {Tityus serrulatus} SCOP: g.3.7.2 Probab=2.58 E-value=1.7e+02 Score=12.86 Aligned_cols=12 Identities=42% Similarity=0.661 Sum_probs=4.6 Q ss_pred HHHHHHHHHHHC Q ss_conf 899987544306 Q 537021.9.peg.1 25 SAISRRIGQRTG 36 (48) Q Consensus 25 saisrrigqrtg 36 (48) ||-..-+|..|| T Consensus 15 sackklvgkatg 26 (35) T 1tsk_A 15 SACKKLVGKATG 26 (35) T ss_dssp HHHHHHTSSSCC T ss_pred HHHHHHHHHCCC T ss_conf 999998613037 No 10 >1te7_A Hypothetical UPF0267 protein YQFB; alpha + beta, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: b.122.1.7 Probab=2.51 E-value=3.7e+02 Score=11.23 Aligned_cols=7 Identities=71% Similarity=1.179 Sum_probs=0.0 Q ss_pred EEEEECC Q ss_conf 7887409 Q 537021.9.peg.1 42 YVIEFDL 48 (48) Q Consensus 42 yviefdl 48 (48) |||+|.| T Consensus 96 ~vI~F~l 102 (103) T 1te7_A 96 YVIEFKC 102 (103) T ss_dssp EEEEEEC T ss_pred EEEEEEE T ss_conf 9999998 Done!