RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.1123_1 (48 letters) >gnl|CDD|177572 PHA03273, PHA03273, envelope glycoprotein C; Provisional. Length = 486 Score = 25.3 bits (55), Expect = 3.5 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%) Query: 13 RNSLLGREKRNRSAISRRIGQRTGIIHD 40 +LL RS SRR GQ G+I D Sbjct: 152 DQTLLLFSTAERSVKSRRGGQ-LGVIPD 178 >gnl|CDD|179703 PRK04000, PRK04000, translation initiation factor IF-2 subunit gamma; Validated. Length = 411 Score = 24.0 bits (53), Expect = 8.8 Identities = 9/15 (60%), Positives = 12/15 (80%) Query: 20 EKRNRSAISRRIGQR 34 E+ +R AISRR+G R Sbjct: 387 EEGDRVAISRRVGGR 401 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.323 0.138 0.382 Gapped Lambda K H 0.267 0.0704 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 707,943 Number of extensions: 27156 Number of successful extensions: 57 Number of sequences better than 10.0: 1 Number of HSP's gapped: 57 Number of HSP's successfully gapped: 5 Length of query: 48 Length of database: 5,994,473 Length adjustment: 21 Effective length of query: 27 Effective length of database: 5,540,705 Effective search space: 149599035 Effective search space used: 149599035 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.1 bits)