RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.1123_1
         (48 letters)



>gnl|CDD|177572 PHA03273, PHA03273, envelope glycoprotein C; Provisional.
          Length = 486

 Score = 25.3 bits (55), Expect = 3.5
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 13  RNSLLGREKRNRSAISRRIGQRTGIIHD 40
             +LL      RS  SRR GQ  G+I D
Sbjct: 152 DQTLLLFSTAERSVKSRRGGQ-LGVIPD 178


>gnl|CDD|179703 PRK04000, PRK04000, translation initiation factor IF-2 subunit
           gamma; Validated.
          Length = 411

 Score = 24.0 bits (53), Expect = 8.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 20  EKRNRSAISRRIGQR 34
           E+ +R AISRR+G R
Sbjct: 387 EEGDRVAISRRVGGR 401


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.323    0.138    0.382 

Gapped
Lambda     K      H
   0.267   0.0704    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 707,943
Number of extensions: 27156
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 5
Length of query: 48
Length of database: 5,994,473
Length adjustment: 21
Effective length of query: 27
Effective length of database: 5,540,705
Effective search space: 149599035
Effective search space used: 149599035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.1 bits)