BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= 537021.9.peg.1140_1
(90 letters)
Database: nr
13,984,884 sequences; 4,792,584,752 total letters
Searching..................................................done
>gi|317120665|gb|ADV02488.1| hypothetical protein SC1_gp010 [Liberibacter phage SC1]
gi|317120809|gb|ADV02630.1| hypothetical protein SC1_gp010 [Candidatus Liberibacter
asiaticus]
Length = 90
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 89/90 (98%), Positives = 90/90 (100%)
Query: 1 MTKRQEDHYITREEFIEFCTNSNSKQDCLISQFKLFEKHYREQQKGVNEILDILKSVKWL 60
MTKRQEDHYITREEFIEFCTNSNSKQDCLISQFKLFEKHYREQQKGVNEILDILKSVKWL
Sbjct: 1 MTKRQEDHYITREEFIEFCTNSNSKQDCLISQFKLFEKHYREQQKGVNEILDILKSVKWL 60
Query: 61 FSALKNIAIAVTSLTAIIYGLLNIKGWFKQ 90
FSALKNIAIAVTSLTAIIYG+LNIKGWFKQ
Sbjct: 61 FSALKNIAIAVTSLTAIIYGILNIKGWFKQ 90
>gi|317120706|gb|ADV02528.1| hypothetical protein SC2_gp010 [Liberibacter phage SC2]
gi|317120767|gb|ADV02588.1| hypothetical protein SC2_gp010 [Candidatus Liberibacter
asiaticus]
Length = 90
Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 88/90 (97%), Positives = 89/90 (98%)
Query: 1 MTKRQEDHYITREEFIEFCTNSNSKQDCLISQFKLFEKHYREQQKGVNEILDILKSVKWL 60
MTKRQED YITREEFIEFCTNSNSKQDCLISQFKLFEKHYREQQKGVNEILDILKSVKWL
Sbjct: 1 MTKRQEDRYITREEFIEFCTNSNSKQDCLISQFKLFEKHYREQQKGVNEILDILKSVKWL 60
Query: 61 FSALKNIAIAVTSLTAIIYGLLNIKGWFKQ 90
FSALKNIAIAVTSLTAIIYG+LNIKGWFKQ
Sbjct: 61 FSALKNIAIAVTSLTAIIYGILNIKGWFKQ 90
>gi|317120749|gb|ADV02571.1| hypothetical protein SC2_gp255 [Liberibacter phage SC2]
gi|317120763|gb|ADV02584.1| hypothetical protein SC2_gp255 [Candidatus Liberibacter
asiaticus]
Length = 90
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 85/90 (94%), Positives = 87/90 (96%)
Query: 1 MTKRQEDHYITREEFIEFCTNSNSKQDCLISQFKLFEKHYREQQKGVNEILDILKSVKWL 60
M KRQED+YITREEFIEFCTNSNSKQDCLIS KLFEKHYREQQKGVNEILDILKSVKWL
Sbjct: 1 MAKRQEDYYITREEFIEFCTNSNSKQDCLISHCKLFEKHYREQQKGVNEILDILKSVKWL 60
Query: 61 FSALKNIAIAVTSLTAIIYGLLNIKGWFKQ 90
FSALKNIAIAVTSLTAIIYG+LNIKGWFKQ
Sbjct: 61 FSALKNIAIAVTSLTAIIYGILNIKGWFKQ 90
>gi|315121925|ref|YP_004062414.1| hypothetical protein CKC_00875 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495327|gb|ADR51926.1| hypothetical protein CKC_00875 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 85
Score = 97.0 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 49/90 (54%), Positives = 70/90 (77%), Gaps = 5/90 (5%)
Query: 1 MTKRQEDHYITREEFIEFCTNSNSKQDCLISQFKLFEKHYREQQKGVNEILDILKSVKWL 60
MTKRQE Y+T++EF E ++K DC+I+ K+ E+ R+QQ+G+ EIL+IL+ +KW
Sbjct: 1 MTKRQE-QYVTKQEFNEL----SAKVDCIITHLKVCERSERKQQQGIEEILNILQGLKWF 55
Query: 61 FSALKNIAIAVTSLTAIIYGLLNIKGWFKQ 90
F+++KNIAI VTSL+AI+YG+ NIKGW KQ
Sbjct: 56 FASIKNIAIIVTSLSAILYGVFNIKGWLKQ 85
>gi|315122887|ref|YP_004063376.1| hypothetical protein CKC_05715 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496289|gb|ADR52888.1| hypothetical protein CKC_05715 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 85
Score = 80.5 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 45/90 (50%), Positives = 57/90 (63%), Gaps = 5/90 (5%)
Query: 1 MTKRQEDHYITREEFIEFCTNSNSKQDCLISQFKLFEKHYREQQKGVNEILDILKSVKWL 60
MTKRQE Y+T++EF E N+K DCLI+ K+FE+HY EQQ + IL IL + K L
Sbjct: 1 MTKRQE-QYVTKQEFNEL----NAKVDCLITHCKVFERHYNEQQNDIKSILQILNTSKGL 55
Query: 61 FSALKNIAIAVTSLTAIIYGLLNIKGWFKQ 90
S +K SL+AIIY L N+K W KQ
Sbjct: 56 ASFIKTSGAITASLSAIIYALYNLKAWLKQ 85
>gi|315122304|ref|YP_004062793.1| hypothetical protein CKC_02780 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495706|gb|ADR52305.1| hypothetical protein CKC_02780 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 92
Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/97 (44%), Positives = 55/97 (56%), Gaps = 12/97 (12%)
Query: 1 MTKRQEDHYITREEFIEFCTNSNSKQDCLISQFKLFE-----KHYRE--QQKGVNEILDI 53
M KRQ D +TR+EF +SK D + QFK E K R+ QQK + EIL+I
Sbjct: 1 MAKRQ-DQTVTRQEFKAL----DSKVDHIDKQFKALEARDKKKQARDEKQQKYIEEILNI 55
Query: 54 LKSVKWLFSALKNIAIAVTSLTAIIYGLLNIKGWFKQ 90
L + K L S +K I SL+AIIY + N+KGW KQ
Sbjct: 56 LNTSKGLASFIKMIGAITASLSAIIYAIYNLKGWLKQ 92
>gi|315122320|ref|YP_004062809.1| hypothetical protein CKC_02860 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495722|gb|ADR52321.1| hypothetical protein CKC_02860 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 55
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 40 YREQQKGVNEILDILKSVKWLFSALKNIAIAVTSLTAIIYGLLNIKGWFK 89
YR QQKG+ EI ++L + K L S +K SL+AIIY L N+K W K
Sbjct: 6 YR-QQKGIEEIFNLLNTSKGLASFIKTSGAITASLSAIIYALYNLKNWIK 54
>gi|168186942|ref|ZP_02621577.1| DNA gyrase subunit A [Clostridium botulinum C str. Eklund]
gi|169295241|gb|EDS77374.1| DNA gyrase subunit A [Clostridium botulinum C str. Eklund]
Length = 970
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 32 QFKLFEKHYREQQKGVNEILDILKSVKWLFSALK 65
+ K+FEK YRE Q+ +N + IL S K LF +K
Sbjct: 448 EIKVFEKEYRELQRRINALTKILNSEKELFKVIK 481
>gi|118442946|ref|YP_878398.1| DNA topoisomerase IV subunit A [Clostridium novyi NT]
gi|118133402|gb|ABK60446.1| DNA gyrase, A subunit [Clostridium novyi NT]
Length = 970
Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 32 QFKLFEKHYREQQKGVNEILDILKSVKWLFSALK 65
+ K+FEK Y+E Q+ +N + IL S K LF +K
Sbjct: 448 EIKVFEKEYKELQRRINALTKILNSEKELFKVIK 481
Database: nr
Posted date: May 13, 2011 4:10 AM
Number of letters in database: 999,999,932
Number of sequences in database: 2,987,209
Database: /data/usr2/db/fasta/nr.01
Posted date: May 13, 2011 4:17 AM
Number of letters in database: 999,998,956
Number of sequences in database: 2,896,973
Database: /data/usr2/db/fasta/nr.02
Posted date: May 13, 2011 4:23 AM
Number of letters in database: 999,999,979
Number of sequences in database: 2,907,862
Database: /data/usr2/db/fasta/nr.03
Posted date: May 13, 2011 4:29 AM
Number of letters in database: 999,999,513
Number of sequences in database: 2,932,190
Database: /data/usr2/db/fasta/nr.04
Posted date: May 13, 2011 4:33 AM
Number of letters in database: 792,586,372
Number of sequences in database: 2,260,650
Lambda K H
0.323 0.136 0.400
Lambda K H
0.267 0.0441 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 926,378,637
Number of Sequences: 13984884
Number of extensions: 34443437
Number of successful extensions: 95019
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 95010
Number of HSP's gapped (non-prelim): 10
length of query: 90
length of database: 4,792,584,752
effective HSP length: 60
effective length of query: 30
effective length of database: 3,953,491,712
effective search space: 118604751360
effective search space used: 118604751360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 76 (33.8 bits)