RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.1140_1
         (90 letters)



>d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206
          {Streptomyces coelicolor [TaxId: 1902]}
          Length = 200

 Score = 23.9 bits (51), Expect = 3.9
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 7  DHYITREEFIEFCTNSNSKQDCLISQFKLFEK 38
          +H IT EE +E     ++    L    +L E 
Sbjct: 12 EHVITMEETLELARRRHTDHPQLPLALRLIEN 43


>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1)
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 190

 Score = 23.6 bits (50), Expect = 4.3
 Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 4/32 (12%)

Query: 7   DHYITREEFIEFCTNSNSKQDCLISQFKLFEK 38
           D YIT +EF E           +I    L++ 
Sbjct: 161 DGYITLDEFREGS----KVDPSIIGALNLYDG 188


>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting
           protein {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 178

 Score = 23.2 bits (49), Expect = 5.8
 Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 4/31 (12%)

Query: 7   DHYITREEFIEFCTNSNSKQDCLISQFKLFE 37
           D  +T +EF+E C     + D ++   +LF+
Sbjct: 149 DGIVTLDEFLESC----QEDDNIMRSLQLFQ 175


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0584    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 325,339
Number of extensions: 12208
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 18
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.2 bits)