BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.1140_1
         (90 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.1140_1 
          Length = 90

 Score =  185 bits (470), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 90/90 (100%), Positives = 90/90 (100%)

Query: 1  MTKRQEDHYITREEFIEFCTNSNSKQDCLISQFKLFEKHYREQQKGVNEILDILKSVKWL 60
          MTKRQEDHYITREEFIEFCTNSNSKQDCLISQFKLFEKHYREQQKGVNEILDILKSVKWL
Sbjct: 1  MTKRQEDHYITREEFIEFCTNSNSKQDCLISQFKLFEKHYREQQKGVNEILDILKSVKWL 60

Query: 61 FSALKNIAIAVTSLTAIIYGLLNIKGWFKQ 90
          FSALKNIAIAVTSLTAIIYGLLNIKGWFKQ
Sbjct: 61 FSALKNIAIAVTSLTAIIYGLLNIKGWFKQ 90


>gi|254781134|ref|YP_003065547.1| hypothetical protein CLIBASIA_05180 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 320

 Score = 22.3 bits (46), Expect = 1.6,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 17/27 (62%)

Query: 3   KRQEDHYITREEFIEFCTNSNSKQDCL 29
           K  ++ ++T+++  +FC N  +  +CL
Sbjct: 268 KWTDNLFVTKKKLFQFCQNVVAYGNCL 294


>gi|254780812|ref|YP_003065225.1| uroporphyrinogen decarboxylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 346

 Score = 21.9 bits (45), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 46  GVNEILDILKSVKWLFS 62
           GVN ILD+L S  ++F+
Sbjct: 304 GVNAILDVLGSGPFIFN 320


>gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 750

 Score = 21.6 bits (44), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 37 EKHYREQQKGVNEILDILKSVKWLFSALKNIAIAVTS 73
          E++YRE+ K ++ I + +K  +    ALK   ++  S
Sbjct: 32 ERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMS 68


>537021.9.peg.410_1 
          Length = 952

 Score = 21.2 bits (43), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 42  EQQKGVNEILDILKSVKWLFSALKN 66
           E+++ + +++D  K  K LFS +KN
Sbjct: 725 EREETIKQLMDEQKIPKKLFSPIKN 749


>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 539

 Score = 20.0 bits (40), Expect = 7.7,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 55  KSVKWLFSALKNIAIAVTSLTAIIYGLLNIKGW 87
           +++ W+   L+  + AV  +T   Y L N+  W
Sbjct: 190 ETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNW 222


>gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 947

 Score = 19.6 bits (39), Expect = 9.7,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 30  ISQFKLFEKHYREQQKGVNEILDILKSVK 58
           I  F  F K     +K + ++LD L S+K
Sbjct: 875 IGDFVDFVKERSRLKKSLEKVLDELSSIK 903


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.136    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,432
Number of Sequences: 1233
Number of extensions: 1645
Number of successful extensions: 10
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 90
length of database: 328,796
effective HSP length: 58
effective length of query: 32
effective length of database: 257,282
effective search space:  8233024
effective search space used:  8233024
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 31 (16.5 bits)