HHsearch alignment for GI: peg_1142 and conserved domain: PHA01972
>PHA01972 structural protein.
Probab=100.00 E-value=0 Score=410.63 Aligned_cols=204 Identities=21% Similarity=0.285 Sum_probs=185.9
Q ss_pred CHHHHHHHHHHHHCCCCCCC--CCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHHHHH
Q ss_conf 33476786542201321136--87617-8999999998631199999999985630322123---699999999999999
Q 537021.9.peg.1 2 QEHARGSVGSTIQDKRWITG--KDGSV-NNLARLMGQFLVMPISWSRMHLIEIPSSLVGVSS---QVYRAKALVIGILGE 75 (218)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~tg--~~Gt~-ge~~R~~~QFK~fPis~~~m~~~~r~~~~~g~~s---~~~~aaaL~at~tl~ 75 (218)
T Consensus 589 de~~~AV~tp~~r~rai~~~g~q~GT~~GE~~Rs~~qFKSFpia~~-~~~~~R~~~~~G~~~~~~~~~y~a~l~~~tTl~ 667 (828)
T PHA01972 589 GETMMAVPTPDARTRAIMAGGTKSGTFGGELHRSFFLFKSFPIATI-MRHWRRAFTGKGYPGAFDRMAYAAIMVASTTLL 667 (828)
T ss_pred CCCCEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 1121101588536789882788898488999999999841489999-999999986068886046788999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH--HHHCC-----CCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999985489877786523589999852233--43020-----0002342-0002524676899998777865541
Q 537021.9.peg.1 76 ELIRKTLVPLISGKEPQLDFSDPTEYIKALINGIT--HYERF-----SPFNSSG-WDVLGPWSSQAGKLAIAGKEAVWDE 147 (218)
Q Consensus 76 Gal~~qlk~LL~GkdP~~d~tdp~fw~~a~l~Ggg--~fgD~-----t~ygSsg-~~vlGP~~s~~~~L~~~~~~~~~~e 147 (218)
T Consensus 668 G~~s~q~K~ll~GrdPr-~~~~~~fw~~a~lqGGGlGi~GDfL~~~~~r~G~~~~~~~aGP~~s~~~~l~~l~~~~~~~a 746 (828)
T PHA01972 668 GAGSIQAKDLLNGKDPR-SMTDPKFWIEALLKGGSFGYYGDFLRNAHTGYGSDMTSYIGGPVLSYGDQLTKWVAMNPQDA 746 (828)
T ss_pred HHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCHHHH
T ss_conf 99999999997799999-99862499999973687125799987653143510788862860567999999862138888
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 13101483145779999862186144899999999999999999728414689999999999
Q 537021.9.peg.1 148 GTRKQRGKAQAQFGKELVNTFVPFQNLWYARGAFNHFVRNSIDDVLNPGGRARAEVYRQRQK 209 (218)
Q Consensus 148 ~~~~~~~~~~~~~~~k~v~~~~P~~NLWYtK~a~d~li~~qlqe~~~Pg~~~r~e~~~~R~~ 209 (218)
T Consensus 747 ~~G~~~~~g~d~~--~~~k~~tP~~NLWy~k~a~d~Li~dqlqe~~~PGy~~R~~~R~~k~~ 806 (828)
T PHA01972 747 AQGKAESAGADLL--KFATQQTPFANLWYTKAATDRLIMDQLQELSSPGYDKKQLNRSRREF 806 (828)
T ss_pred HCCCCHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 5699503489999--99985696066999999999999999998839865899999999981