HHsearch alignment for GI: peg_1142 and conserved domain: PHA01972

>PHA01972 structural protein.
Probab=100.00  E-value=0  Score=410.63  Aligned_cols=204  Identities=21%  Similarity=0.285  Sum_probs=185.9

Q ss_pred             CHHHHHHHHHHHHCCCCCCC--CCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHHHHH
Q ss_conf             33476786542201321136--87617-8999999998631199999999985630322123---699999999999999
Q 537021.9.peg.1    2 QEHARGSVGSTIQDKRWITG--KDGSV-NNLARLMGQFLVMPISWSRMHLIEIPSSLVGVSS---QVYRAKALVIGILGE   75 (218)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~tg--~~Gt~-ge~~R~~~QFK~fPis~~~m~~~~r~~~~~g~~s---~~~~aaaL~at~tl~   75 (218)
T Consensus       589 de~~~AV~tp~~r~rai~~~g~q~GT~~GE~~Rs~~qFKSFpia~~-~~~~~R~~~~~G~~~~~~~~~y~a~l~~~tTl~  667 (828)
T PHA01972        589 GETMMAVPTPDARTRAIMAGGTKSGTFGGELHRSFFLFKSFPIATI-MRHWRRAFTGKGYPGAFDRMAYAAIMVASTTLL  667 (828)
T ss_pred             CCCCEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             1121101588536789882788898488999999999841489999-999999986068886046788999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH--HHHCC-----CCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999985489877786523589999852233--43020-----0002342-0002524676899998777865541
Q 537021.9.peg.1   76 ELIRKTLVPLISGKEPQLDFSDPTEYIKALINGIT--HYERF-----SPFNSSG-WDVLGPWSSQAGKLAIAGKEAVWDE  147 (218)
Q Consensus        76 Gal~~qlk~LL~GkdP~~d~tdp~fw~~a~l~Ggg--~fgD~-----t~ygSsg-~~vlGP~~s~~~~L~~~~~~~~~~e  147 (218)
T Consensus       668 G~~s~q~K~ll~GrdPr-~~~~~~fw~~a~lqGGGlGi~GDfL~~~~~r~G~~~~~~~aGP~~s~~~~l~~l~~~~~~~a  746 (828)
T PHA01972        668 GAGSIQAKDLLNGKDPR-SMTDPKFWIEALLKGGSFGYYGDFLRNAHTGYGSDMTSYIGGPVLSYGDQLTKWVAMNPQDA  746 (828)
T ss_pred             HHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCHHHH
T ss_conf             99999999997799999-99862499999973687125799987653143510788862860567999999862138888


Q ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             13101483145779999862186144899999999999999999728414689999999999
Q 537021.9.peg.1  148 GTRKQRGKAQAQFGKELVNTFVPFQNLWYARGAFNHFVRNSIDDVLNPGGRARAEVYRQRQK  209 (218)
Q Consensus       148 ~~~~~~~~~~~~~~~k~v~~~~P~~NLWYtK~a~d~li~~qlqe~~~Pg~~~r~e~~~~R~~  209 (218)
T Consensus       747 ~~G~~~~~g~d~~--~~~k~~tP~~NLWy~k~a~d~Li~dqlqe~~~PGy~~R~~~R~~k~~  806 (828)
T PHA01972        747 AQGKAESAGADLL--KFATQQTPFANLWYTKAATDRLIMDQLQELSSPGYDKKQLNRSRREF  806 (828)
T ss_pred             HCCCCHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             5699503489999--99985696066999999999999999998839865899999999981