Query 537021.9.peg.1142_1
Match_columns 218
No_of_seqs 32 out of 34
Neff 3.8
Searched_HMMs 33803
Date Wed May 25 08:50:16 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1142.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3f3f_C Nucleoporin NUP85; str 39.9 19 0.00057 16.2 2.2 45 73-120 3-55 (168)
2 >1mw9_X DNA topoisomerase I; d 34.8 30 0.00089 15.2 4.7 38 173-210 7-53 (90)
3 >1yq9_H Periplasmic [NIFE] hyd 32.9 29 0.00084 15.3 2.2 25 83-107 46-71 (99)
4 >1yqw_Q Periplasmic [NIFE] hyd 31.5 29 0.00085 15.3 2.0 25 83-107 53-78 (106)
5 >2gai_A DNA topoisomerase I; z 31.1 35 0.001 14.8 4.5 35 176-210 11-54 (77)
6 >1cc1_L Hydrogenase (large sub 28.0 37 0.0011 14.7 2.1 25 83-107 51-76 (104)
7 >2jx3_A Protein DEK; alpha hel 26.9 19 0.00057 16.2 0.5 23 18-40 35-57 (57)
8 >1gku_B Reverse gyrase, TOP-RG 20.5 56 0.0017 13.7 4.9 35 176-210 10-54 (74)
9 >3fjv_A Uncharacterized novel 20.2 47 0.0014 14.1 1.4 21 45-65 57-77 (194)
10 >3jyv_T S19E protein; eukaryot 15.5 50 0.0015 13.9 0.6 10 112-121 77-86 (141)
No 1
>>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleoporin complex, nuclear pore complex, macromolecular assembly; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B (C:219-386)
Probab=39.86 E-value=19 Score=16.24 Aligned_cols=45 Identities=11% Similarity=-0.045 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHH---HHHHHHHHH-----HHHCCCCCCC
Q ss_conf 99989999999985489877786523589---999852233-----4302000023
Q 537021.9.peg.1 73 LGEELIRKTLVPLISGKEPQLDFSDPTEY---IKALINGIT-----HYERFSPFNS 120 (218)
Q Consensus 73 tl~Gal~~qlk~LL~GkdP~~d~tdp~fw---~~a~l~Ggg-----~fgD~t~ygS 120 (218)
|-.+..+++.++++++.+|..+ |.|| .++.++|-. ++.-|..|.+
T Consensus 3 ~e~~~~i~~~~~l~~~~~p~~~---~~fW~~v~~lvlrG~~~~a~~lL~~~~~~~~ 55 (168)
T 3f3f_C 3 EEYIEQVFSVKDSTAGKKVFET---QYFWKLLNQLVLRGLLSQAIGCIERSDLLPY 55 (168)
T ss_dssp HHHHHHHTTC----CCSSSSCS---HHHHHHHHHHHHTTCHHHHHHHHTTTTTTHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCC---CHHHHHHHHHHHHCCHHHHHHHHHHCCCCHH
T ss_conf 8999999851324468998878---0689999999983578999999986613066
No 2
>>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} (X:157-190,X:537-592)
Probab=34.82 E-value=30 Score=15.16 Aligned_cols=38 Identities=18% Similarity=0.082 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHH---------HHCCCHHHHHHHHHHHHHH
Q ss_conf 4899999999999999999---------7284146899999999999
Q 537021.9.peg.1 173 NLWYARGAFNHFVRNSIDD---------VLNPGGRARAEVYRQRQKY 210 (218)
Q Consensus 173 NLWYtK~a~d~li~~qlqe---------~~~Pg~~~r~e~~~~R~~~ 210 (218)
|---+|-+.||+|.+.+.- .+|.+|+.+||..+..-+.
T Consensus 7 ~aq~aRr~lDrlvGy~lSpllw~ki~~givd~~FTA~ME~~LD~Ia~ 53 (90)
T 1mw9_X 7 NAQQARRFMDRVVGYMVSPLLWKKIARGLMNYDFTAQMENNLDQVAN 53 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCTTHHCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCCHHHHHHHHHHHHHHHC
T ss_conf 99999999879977764078876422671698799999999999985
No 3
>>1yq9_H Periplasmic [NIFE] hydrogenase large subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} (H:1-55,H:493-536)
Probab=32.89 E-value=29 Score=15.29 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=18.5
Q ss_pred HHHHCCCCCC-CCCCCHHHHHHHHHH
Q ss_conf 9985489877-786523589999852
Q 537021.9.peg.1 83 VPLISGKEPQ-LDFSDPTEYIKALIN 107 (218)
Q Consensus 83 k~LL~GkdP~-~d~tdp~fw~~a~l~ 107 (218)
-.+|.||+|+ ...+.|+-|-+|+++
T Consensus 46 E~iL~GR~p~rd~~g~~gp~E~al~g 71 (99)
T 1yq9_H 46 EMILKGRDPRRCAEGKLSAVEQALIG 71 (99)
T ss_dssp HHHHTTSCGGCCTTCCCCHHHHHHTT
T ss_pred HHHHCCCCHHCCCCCCHHHHHHHHCC
T ss_conf 89867999884444560399998379
No 4
>>1yqw_Q Periplasmic [NIFE] hydrogenase large subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 1yrq_H 3h3x_Q 3cus_Q 3cur_H 1frf_L (Q:1-62,Q:506-549)
Probab=31.50 E-value=29 Score=15.27 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=18.2
Q ss_pred HHHHCCCCCC-CCCCCHHHHHHHHHH
Q ss_conf 9985489877-786523589999852
Q 537021.9.peg.1 83 VPLISGKEPQ-LDFSDPTEYIKALIN 107 (218)
Q Consensus 83 k~LL~GkdP~-~d~tdp~fw~~a~l~ 107 (218)
-.+|.||+|| ...+.++-|-+|+++
T Consensus 53 E~iL~GR~prrd~~g~~g~~E~al~g 78 (106)
T 1yqw_Q 53 EIILKGRDPRRGAQGDKSPVEEALIG 78 (106)
T ss_dssp HHHHTTSCGGCCTTCCCCHHHHHHTT
T ss_pred HHHHCCCCHHCCCCCCHHHHHHHHCC
T ss_conf 99976999883323466699999579
No 5
>>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima MSB8} PDB: 2gaj_A* (A:128-162,A:505-546)
Probab=31.10 E-value=35 Score=14.81 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHH---------HHCCCHHHHHHHHHHHHHH
Q ss_conf 9999999999999999---------7284146899999999999
Q 537021.9.peg.1 176 YARGAFNHFVRNSIDD---------VLNPGGRARAEVYRQRQKY 210 (218)
Q Consensus 176 YtK~a~d~li~~qlqe---------~~~Pg~~~r~e~~~~R~~~ 210 (218)
-+|-+.||+|.+.+.. .+|.+|+.+||..+..-+.
T Consensus 11 ~~Rr~lDr~vG~~lS~~lw~k~~~~iid~~FTA~ME~~LD~Ia~ 54 (77)
T 2gai_A 11 LARRILDRIVGYSLSPVLWRNFKSNVVSVSFTAEMEKDLDEVEQ 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf 99999998765647777765200340899999999999999985
No 6
>>1cc1_L Hydrogenase (large subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfovibrio baculatus} (L:1-60,L:455-498)
Probab=28.01 E-value=37 Score=14.67 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=18.4
Q ss_pred HHHHCCCCCC-CCCCCHHHHHHHHHH
Q ss_conf 9985489877-786523589999852
Q 537021.9.peg.1 83 VPLISGKEPQ-LDFSDPTEYIKALIN 107 (218)
Q Consensus 83 k~LL~GkdP~-~d~tdp~fw~~a~l~ 107 (218)
-.+|.||+|| ...+.|+-|-+|+++
T Consensus 51 E~iL~GR~prrd~~g~~gp~E~al~g 76 (104)
T 1cc1_L 51 EQILRGRDPRRDDMGQRGPIEEALIG 76 (104)
T ss_dssp HHHTTTSCGGCCTTCCCCHHHHHHTT
T ss_pred HHHHCCCCHHCCCCCCHHHHHHHHCC
T ss_conf 99977999883322344499998579
No 7
>>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens} (A:1-57)
Probab=26.92 E-value=19 Score=16.24 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=19.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 11368761789999999986311
Q 537021.9.peg.1 18 WITGKDGSVNNLARLMGQFLVMP 40 (218)
Q Consensus 18 ~~tg~~Gt~ge~~R~~~QFK~fP 40 (218)
.+-|.+|...|+-|-..||..||
T Consensus 35 ilygr~Gk~~~~K~nI~~FsGFp 57 (57)
T 2jx3_A 35 LLYNRPGTVSSLKKNVGQFSGFP 57 (57)
T ss_dssp HTSSSCCCSHHHHHHHHTSSCSS
T ss_pred HHCCCCCHHHHHHHHHHHCCCCC
T ss_conf 98389970879999899667988
No 8
>>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} (B:676-710,B:1016-1054)
Probab=20.45 E-value=56 Score=13.66 Aligned_cols=35 Identities=6% Similarity=0.027 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHH----------HHCCCHHHHHHHHHHHHHH
Q ss_conf 9999999999999999----------7284146899999999999
Q 537021.9.peg.1 176 YARGAFNHFVRNSIDD----------VLNPGGRARAEVYRQRQKY 210 (218)
Q Consensus 176 YtK~a~d~li~~qlqe----------~~~Pg~~~r~e~~~~R~~~ 210 (218)
-+|-+.||+|.+.+.. .+|-.|+++||..+..-+.
T Consensus 10 ~~RR~lDr~vGf~lS~~Lw~k~~~~~ivd~~FTA~ME~~LD~Ia~ 54 (74)
T 1gku_B 10 VVRRIEDRWIGFVLSQKLWERFNNRNFVSEDRTRDLESRMDAIER 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCSSGGSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHH
T ss_conf 998886537888775999998537777245422326776557873
No 9
>>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function, structural genomics; HET: MSE; 1.90A {Burkholderia pseudomallei K96243} (A:)
Probab=20.16 E-value=47 Score=14.08 Aligned_cols=21 Identities=14% Similarity=0.009 Sum_probs=8.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHH
Q ss_conf 999998563032212369999
Q 537021.9.peg.1 45 RMHLIEIPSSLVGVSSQVYRA 65 (218)
Q Consensus 45 ~m~~~~r~~~~~g~~s~~~~a 65 (218)
+|-+.+|.+...++.-...-+
T Consensus 57 EMlr~Eri~~~~~I~~Ei~aY 77 (194)
T 3fjv_A 57 EXLHIEKIFDEDGIQAELDAY 77 (194)
T ss_dssp HHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
T ss_conf 999997166688899999985
No 10
>>3jyv_T S19E protein; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} (T:)
Probab=15.46 E-value=50 Score=13.94 Aligned_cols=10 Identities=10% Similarity=0.009 Sum_probs=5.3
Q ss_pred HHCCCCCCCC
Q ss_conf 3020000234
Q 537021.9.peg.1 112 YERFSPFNSS 121 (218)
Q Consensus 112 fgD~t~ygSs 121 (218)
||+--++|+.
T Consensus 77 YGg~krrG~~ 86 (141)
T 3jyv_T 77 YGGAKSRGVR 86 (141)
T ss_dssp SSCCTTTCCC
T ss_pred HCCCCCCCCC
T ss_conf 7888779999
Done!