RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.1142_1
         (218 letters)



>gnl|CDD|36707 KOG1494, KOG1494, KOG1494, NAD-dependent malate dehydrogenase
           [Energy production and conversion].
          Length = 345

 Score = 30.6 bits (69), Expect = 0.37
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 15/71 (21%)

Query: 52  PSSLVGVSS-QVYRAKALVIGILGEELIRK------------TLVPLISGKEPQLDFSDP 98
           P  L GV++  V RA   V  +L  +                T++PL+S  +P   F+D 
Sbjct: 167 PKKLFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTD- 225

Query: 99  TEYIKALINGI 109
            + I+AL + I
Sbjct: 226 -DEIEALTHRI 235


>gnl|CDD|35432 KOG0211, KOG0211, KOG0211, Protein phosphatase 2A regulatory
           subunit A and related proteins [Signal transduction
           mechanisms].
          Length = 759

 Score = 29.2 bits (65), Expect = 0.93
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 19/103 (18%)

Query: 23  DGSVNNLARLMGQFLVMPISWSRMHLIEIPSSLVGVSSQVYR-------AKALVIGILGE 75
           + +  NL  L+  F      W+R  L EIP  L       Y        +   +  +LG+
Sbjct: 536 EAAARNLPALVETF---GSEWAR--LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQ 590

Query: 76  ELIRKTLVPLISGKEPQLDFSDPTEYIKALINGITHYERFSPF 118
           E+  + L+P+           DP   ++  IN   H  +    
Sbjct: 591 EITCEDLLPVFLDLV-----KDPVANVR--INVAKHLPKILKL 626


>gnl|CDD|143469 cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde
           dehydrogenase-like.  NADP+-dependent,
           p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH)
           which catalyzes oxidation of p-hydroxybenzaldehyde to
           p-hydroxybenzoic acid and other related sequences are
           included in this CD.
          Length = 465

 Score = 27.3 bits (61), Expect = 3.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 44  SRMHLIEIPSSLVGVSSQVYRAKALVIGILG 74
            RM    +PS + G  ++VYR    V+G++ 
Sbjct: 108 LRMEGRILPSDVPGKENRVYREPLGVVGVIS 138


>gnl|CDD|146667 pfam04147, Nop14, Nop14-like family.  Emg1 and Nop14 are novel
           proteins whose interaction is required for the
           maturation of the 18S rRNA and for 40S ribosome
           production.
          Length = 809

 Score = 26.5 bits (59), Expect = 5.2
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 6/33 (18%)

Query: 189 IDDVLNPGG------RARAEVYRQRQKYKKQRK 215
            ++  NP        R RAE+ + + + KK+RK
Sbjct: 731 FEENFNPDKKSYDPDRERAELNKLKAQLKKERK 763


>gnl|CDD|37454 KOG2243, KOG2243, KOG2243, Ca2+ release channel (ryanodine receptor)
            [Signal transduction mechanisms].
          Length = 5019

 Score = 26.2 bits (57), Expect = 6.5
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 142  EAVWDEGTRKQRGKAQAQFGKELVNTFVPFQNL-WYARGAFNHFVRN 187
            E +WDEG +K++     +  +        F+ +  Y +   ++F RN
Sbjct: 4504 EYLWDEGKKKKKQLCGHKVEEPEAFEAAFFKGIEAYQQKLLHYFARN 4550


>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and
           mitochondrial malate dehydrogenases.  MDH is one of the
           key enzymes in the citric acid cycle, facilitating both
           the conversion of malate to oxaloacetate and
           replenishing levels of oxalacetate by reductive
           carboxylation of pyruvate. Members of this subfamily are
           localized to the glycosome and mitochondria. MDHs are
           part of the NAD(P)-binding Rossmann fold superfamily,
           which includes a wide variety of protein families
           including the NAD(P)-binding domains of alcohol
           dehydrogenases, tyrosine-dependent oxidoreductases,
           glyceraldehyde-3-phosphate dehydrogenases,
           formate/glycerate dehydrogenases, siroheme synthases,
           6-phosphogluconate dehydrogenases, aminoacid
           dehydrogenases, repressor rex, and NAD-binding potassium
           channel domains, among others.
          Length = 310

 Score = 25.9 bits (58), Expect = 8.5
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 80  KTLVPLISGKEPQLDFSDPTEYIKALINGI 109
            T++PL+S  +P   F    E I+AL + I
Sbjct: 179 VTILPLLSQCQPPFTFDQ--EEIEALTHRI 206


>gnl|CDD|38903 KOG3699, KOG3699, KOG3699, Cytoskeletal protein Adducin [Signal
           transduction mechanisms, Cytoskeleton].
          Length = 598

 Score = 25.9 bits (56), Expect = 9.6
 Identities = 14/34 (41%), Positives = 16/34 (47%)

Query: 183 HFVRNSIDDVLNPGGRARAEVYRQRQKYKKQRKR 216
           +F R S DD      R RA   RQ     +QRKR
Sbjct: 14  YFDRFSEDDPEYMRLRNRAADLRQDFNLMEQRKR 47


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.318    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0730    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,742,702
Number of extensions: 140511
Number of successful extensions: 280
Number of sequences better than 10.0: 1
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 9
Length of query: 218
Length of database: 6,263,737
Length adjustment: 90
Effective length of query: 128
Effective length of database: 4,318,927
Effective search space: 552822656
Effective search space used: 552822656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)