BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.1142_1
         (218 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.1142_1 
          Length = 218

 Score =  447 bits (1150), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/218 (100%), Positives = 218/218 (100%)

Query: 1   VQEHARGSVGSTIQDKRWITGKDGSVNNLARLMGQFLVMPISWSRMHLIEIPSSLVGVSS 60
           VQEHARGSVGSTIQDKRWITGKDGSVNNLARLMGQFLVMPISWSRMHLIEIPSSLVGVSS
Sbjct: 1   VQEHARGSVGSTIQDKRWITGKDGSVNNLARLMGQFLVMPISWSRMHLIEIPSSLVGVSS 60

Query: 61  QVYRAKALVIGILGEELIRKTLVPLISGKEPQLDFSDPTEYIKALINGITHYERFSPFNS 120
           QVYRAKALVIGILGEELIRKTLVPLISGKEPQLDFSDPTEYIKALINGITHYERFSPFNS
Sbjct: 61  QVYRAKALVIGILGEELIRKTLVPLISGKEPQLDFSDPTEYIKALINGITHYERFSPFNS 120

Query: 121 SGWDVLGPWSSQAGKLAIAGKEAVWDEGTRKQRGKAQAQFGKELVNTFVPFQNLWYARGA 180
           SGWDVLGPWSSQAGKLAIAGKEAVWDEGTRKQRGKAQAQFGKELVNTFVPFQNLWYARGA
Sbjct: 121 SGWDVLGPWSSQAGKLAIAGKEAVWDEGTRKQRGKAQAQFGKELVNTFVPFQNLWYARGA 180

Query: 181 FNHFVRNSIDDVLNPGGRARAEVYRQRQKYKKQRKRNG 218
           FNHFVRNSIDDVLNPGGRARAEVYRQRQKYKKQRKRNG
Sbjct: 181 FNHFVRNSIDDVLNPGGRARAEVYRQRQKYKKQRKRNG 218


>gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 864

 Score = 50.1 bits (118), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 42/235 (17%)

Query: 1   VQEHARGSVGSTIQDKR---WITGKDGS-VNNLARLMGQFLVMPISWSRMHLIEIPSSLV 56
           VQ   RG++ +++ D++    +T K G+      R+  QF   P     ++++++ +S  
Sbjct: 629 VQTSVRGAMHTSLFDRQRLGLLTYKRGTRAGEALRMFQQFTTTPTGMF-LNILDLSNSAK 687

Query: 57  ---GVSSQV------YRAKALVIGILGEELIRKTLVPLISGKEPQLDFSDPTEYIKALIN 107
              G S  +      Y A   + GI G   I+     L+ G++P L       Y   L N
Sbjct: 688 MPKGASMALNHVWIQYSATMALAGI-GVASIK----ALLRGEDPSLP---EVIYDGTLAN 739

Query: 108 G--ITHYERFSPFNSSG-----WDVLGPWSSQAGKLAIAGKEAVWDEGTRKQRGKAQAQF 160
           G  + + +R +   S G       +LGP  S    L  +  E    +    +    +A  
Sbjct: 740 GALLPYMDRLTKLVSKGDRAAIGGLLGPVPSMVTNLTSSAVELATKDNENSKVNATKA-- 797

Query: 161 GKELVNTFVPFQNLWYARGAFNHFVRNSIDDVLNPGGRARAEVYRQRQKYKKQRK 215
               +   +PF N+WY + +F+H + N I + LNPG       Y  RQ+ KK++K
Sbjct: 798 ----IRKTLPFMNMWYLKNSFDHLILNQILEELNPG-------YLDRQQSKKKKK 841


>gi|254780697|ref|YP_003065110.1| large conductance mechanosensitive channel protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 141

 Score = 22.3 bits (46), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 179 GAFNHFVRNSIDDVLNP 195
           GAFN  V++ ++D++ P
Sbjct: 31  GAFNRVVQSIVEDIMMP 47


>gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 896

 Score = 22.3 bits (46), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 44  SRMHLIEIPSSLVGVSSQVYR 64
           SR+ L E+PSS V   ++ Y+
Sbjct: 387 SRLSLSEVPSSFVTEMNEYYK 407


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.135    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,709
Number of Sequences: 1233
Number of extensions: 5929
Number of successful extensions: 8
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 218
length of database: 328,796
effective HSP length: 70
effective length of query: 148
effective length of database: 242,486
effective search space: 35887928
effective search space used: 35887928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)