BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 537021.9.peg.1142_1 (218 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >537021.9.peg.1142_1 Length = 218 Score = 447 bits (1150), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/218 (100%), Positives = 218/218 (100%) Query: 1 VQEHARGSVGSTIQDKRWITGKDGSVNNLARLMGQFLVMPISWSRMHLIEIPSSLVGVSS 60 VQEHARGSVGSTIQDKRWITGKDGSVNNLARLMGQFLVMPISWSRMHLIEIPSSLVGVSS Sbjct: 1 VQEHARGSVGSTIQDKRWITGKDGSVNNLARLMGQFLVMPISWSRMHLIEIPSSLVGVSS 60 Query: 61 QVYRAKALVIGILGEELIRKTLVPLISGKEPQLDFSDPTEYIKALINGITHYERFSPFNS 120 QVYRAKALVIGILGEELIRKTLVPLISGKEPQLDFSDPTEYIKALINGITHYERFSPFNS Sbjct: 61 QVYRAKALVIGILGEELIRKTLVPLISGKEPQLDFSDPTEYIKALINGITHYERFSPFNS 120 Query: 121 SGWDVLGPWSSQAGKLAIAGKEAVWDEGTRKQRGKAQAQFGKELVNTFVPFQNLWYARGA 180 SGWDVLGPWSSQAGKLAIAGKEAVWDEGTRKQRGKAQAQFGKELVNTFVPFQNLWYARGA Sbjct: 121 SGWDVLGPWSSQAGKLAIAGKEAVWDEGTRKQRGKAQAQFGKELVNTFVPFQNLWYARGA 180 Query: 181 FNHFVRNSIDDVLNPGGRARAEVYRQRQKYKKQRKRNG 218 FNHFVRNSIDDVLNPGGRARAEVYRQRQKYKKQRKRNG Sbjct: 181 FNHFVRNSIDDVLNPGGRARAEVYRQRQKYKKQRKRNG 218 >gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter asiaticus str. psy62] Length = 864 Score = 50.1 bits (118), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 42/235 (17%) Query: 1 VQEHARGSVGSTIQDKR---WITGKDGS-VNNLARLMGQFLVMPISWSRMHLIEIPSSLV 56 VQ RG++ +++ D++ +T K G+ R+ QF P ++++++ +S Sbjct: 629 VQTSVRGAMHTSLFDRQRLGLLTYKRGTRAGEALRMFQQFTTTPTGMF-LNILDLSNSAK 687 Query: 57 ---GVSSQV------YRAKALVIGILGEELIRKTLVPLISGKEPQLDFSDPTEYIKALIN 107 G S + Y A + GI G I+ L+ G++P L Y L N Sbjct: 688 MPKGASMALNHVWIQYSATMALAGI-GVASIK----ALLRGEDPSLP---EVIYDGTLAN 739 Query: 108 G--ITHYERFSPFNSSG-----WDVLGPWSSQAGKLAIAGKEAVWDEGTRKQRGKAQAQF 160 G + + +R + S G +LGP S L + E + + +A Sbjct: 740 GALLPYMDRLTKLVSKGDRAAIGGLLGPVPSMVTNLTSSAVELATKDNENSKVNATKA-- 797 Query: 161 GKELVNTFVPFQNLWYARGAFNHFVRNSIDDVLNPGGRARAEVYRQRQKYKKQRK 215 + +PF N+WY + +F+H + N I + LNPG Y RQ+ KK++K Sbjct: 798 ----IRKTLPFMNMWYLKNSFDHLILNQILEELNPG-------YLDRQQSKKKKK 841 >gi|254780697|ref|YP_003065110.1| large conductance mechanosensitive channel protein [Candidatus Liberibacter asiaticus str. psy62] Length = 141 Score = 22.3 bits (46), Expect = 7.2, Method: Compositional matrix adjust. Identities = 7/17 (41%), Positives = 13/17 (76%) Query: 179 GAFNHFVRNSIDDVLNP 195 GAFN V++ ++D++ P Sbjct: 31 GAFNRVVQSIVEDIMMP 47 >gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 896 Score = 22.3 bits (46), Expect = 7.7, Method: Compositional matrix adjust. Identities = 9/21 (42%), Positives = 14/21 (66%) Query: 44 SRMHLIEIPSSLVGVSSQVYR 64 SR+ L E+PSS V ++ Y+ Sbjct: 387 SRLSLSEVPSSFVTEMNEYYK 407 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.135 0.408 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 145,709 Number of Sequences: 1233 Number of extensions: 5929 Number of successful extensions: 8 Number of sequences better than 100.0: 5 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3 Number of HSP's gapped (non-prelim): 5 length of query: 218 length of database: 328,796 effective HSP length: 70 effective length of query: 148 effective length of database: 242,486 effective search space: 35887928 effective search space used: 35887928 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 36 (18.5 bits)