RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.116_1 (39 letters) >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} Length = 257 Score = 23.3 bits (50), Expect = 6.3 Identities = 5/26 (19%), Positives = 11/26 (42%) Query: 9 YNYKKRIGKLPRTMFYNSYRNCIINT 34 +K R+ L ++ F ++ I Sbjct: 4 EKWKSRLNALGKSEFQIYKKSGIQEV 29 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.329 0.143 0.438 Gapped Lambda K H 0.267 0.0593 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 148,661 Number of extensions: 3595 Number of successful extensions: 15 Number of sequences better than 10.0: 1 Number of HSP's gapped: 15 Number of HSP's successfully gapped: 1 Length of query: 39 Length of database: 2,407,596 Length adjustment: 12 Effective length of query: 27 Effective length of database: 2,242,836 Effective search space: 60556572 Effective search space used: 60556572 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 47 (22.2 bits)