BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.116_1
         (39 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.116_1 
          Length = 39

 Score = 79.3 bits (194), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/39 (100%), Positives = 39/39 (100%)

Query: 1  LILTTYEAYNYKKRIGKLPRTMFYNSYRNCIINTINVFY 39
          LILTTYEAYNYKKRIGKLPRTMFYNSYRNCIINTINVFY
Sbjct: 1  LILTTYEAYNYKKRIGKLPRTMFYNSYRNCIINTINVFY 39


>gi|254780138|ref|YP_003064551.1| ABC transporter [Candidatus Liberibacter asiaticus str. psy62]
          Length = 373

 Score = 22.7 bits (47), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 17/24 (70%), Gaps = 2/24 (8%)

Query: 8   AYNYKKRIG--KLPRTMFYNSYRN 29
           ++ ++K+I   K  R+ FYNS++N
Sbjct: 86  SFTHRKKIKNQKPQRSFFYNSFKN 109


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.329    0.143    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,952
Number of Sequences: 1233
Number of extensions: 480
Number of successful extensions: 2
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 39
length of database: 328,796
effective HSP length: 13
effective length of query: 26
effective length of database: 312,767
effective search space:  8131942
effective search space used:  8131942
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 31 (16.5 bits)