Query 537021.9.peg.128_1 Match_columns 42 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Mon May 23 23:57:46 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_128.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2c5u_A RNA ligase, T4 RNA lig 31.7 15 0.00045 18.9 0.7 23 12-34 26-48 (75) 2 >1vyt_E Voltage-dependent L-ty 23.2 29 0.00086 17.5 0.8 13 22-34 9-21 (26) 3 >1e5r_A Proline oxidase; oxido 14.7 1E+02 0.0031 14.8 2.1 20 21-40 47-66 (97) 4 >3h41_A NLP/P60 family protein 11.4 1.3E+02 0.0037 14.4 1.7 13 22-34 28-40 (127) 5 >1oo2_A Transthyretin; retinol 9.2 1.7E+02 0.005 13.7 1.7 27 6-32 29-55 (74) 6 2k1g_A Solution Nmr Structure 8.4 1.5E+02 0.0043 14.0 1.1 14 22-35 29-42 (135) 7 >3dvo_A Sgrair restriction enz 7.5 1.3E+02 0.0037 14.4 0.5 14 7-20 221-234 (323) 8 >2hbw_A NLP/P60 protein; YP_32 6.7 2E+02 0.0061 13.3 1.2 14 22-35 38-51 (150) 9 >1ile_A Ilers, isoleucyl-tRNA 6.5 1.9E+02 0.0056 13.5 0.9 14 19-32 1-14 (72) 10 >2h6u_A 5-hydroxyisourate hydr 6.2 2.5E+02 0.0074 12.9 1.9 28 5-32 29-56 (75) No 1 >>2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding; HET: APC; 2.21A {Bacteriophage T4} (A:1-75) Probab=31.67 E-value=15 Score=18.90 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=17.0 Q ss_pred HHHHCCCCEEEEEEHHHHHHHHH Q ss_conf 01000032378850135899999 Q 537021.9.peg.1 12 KTSLRSFPIQFSFDCAGYFDWLL 34 (42) Q Consensus 12 ktslrsfpiqfsfdcagyfdwll 34 (42) .|++..----||+.-|+|-|||+ T Consensus 26 vt~mgt~~RIFsY~~AsYsDWl~ 48 (75) T 2c5u_A 26 VSASGRTYRIFSYNYASYSDWLL 48 (75) T ss_dssp ECTTCCEEEEEEESCCCHHHHTS T ss_pred EECCCCEEEEEECCCCCHHHHCC T ss_conf 86158726788625543565489 No 2 >>1vyt_E Voltage-dependent L-type calcium channel alpha-1C subunit; transport protein, ION transport/complex, calcium channel beta subunit, AID doamin; 2.6A {Rattus norvegicus} (E:) Probab=23.24 E-value=29 Score=17.53 Aligned_cols=13 Identities=38% Similarity=0.971 Sum_probs=9.6 Q ss_pred EEEEHHHHHHHHH Q ss_conf 8850135899999 Q 537021.9.peg.1 22 FSFDCAGYFDWLL 34 (42) Q Consensus 22 fsfdcagyfdwll 34 (42) ..-|-.||.||+- T Consensus 9 ~eedl~gy~~wit 21 (26) T 1vyt_E 9 LEEDLKGYLDWIT 21 (26) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 8899999999998 No 3 >>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} (A:194-290) Probab=14.67 E-value=1e+02 Score=14.75 Aligned_cols=20 Identities=25% Similarity=0.620 Sum_probs=16.2 Q ss_pred EEEEEHHHHHHHHHHHHHHH Q ss_conf 78850135899999999986 Q 537021.9.peg.1 21 QFSFDCAGYFDWLLVILKRL 40 (42) Q Consensus 21 qfsfdcagyfdwllvilkrl 40 (42) ....+|..-+|||.-|-||- T Consensus 47 ~~~v~~~~~ydWL~ei~kr~ 66 (97) T 1e5r_A 47 KYDVHPSETYDWLIEISKQA 66 (97) T ss_dssp HEESCTTHHHHHHHHHHHHT T ss_pred HCCCCHHHHHHHHHHHHHHC T ss_conf 32587578777899998703 No 4 >>3h41_A NLP/P60 family protein; NP_979181.1, NLPC/P60 family protein, structural genomics, joint center for structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987} (A:185-311) Probab=11.41 E-value=1.3e+02 Score=14.37 Aligned_cols=13 Identities=31% Similarity=0.754 Sum_probs=10.7 Q ss_pred EEEEHHHHHHHHH Q ss_conf 8850135899999 Q 537021.9.peg.1 22 FSFDCAGYFDWLL 34 (42) Q Consensus 22 fsfdcagyfdwll 34 (42) ..|||.|+..|.. T Consensus 28 ~g~DCSglv~~~~ 40 (127) T 3h41_A 28 FGFDXSGFTHTIY 40 (127) T ss_dssp TEECHHHHHHHHH T ss_pred CCCCCHHHHHHHH T ss_conf 8877089999999 No 5 >>1oo2_A Transthyretin; retinol-binding protein, tetramer, transport protein; 1.56A {Sparus aurata} (A:19-92) Probab=9.16 E-value=1.7e+02 Score=13.72 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=16.7 Q ss_pred EEEEEEHHHHCCCCEEEEEEHHHHHHH Q ss_conf 530000010000323788501358999 Q 537021.9.peg.1 6 VKDVAFKTSLRSFPIQFSFDCAGYFDW 32 (42) Q Consensus 6 vkdvafktslrsfpiqfsfdcagyfdw 32 (42) +++.--..++..=--+..|++..||.= T Consensus 29 ~~~l~~~~~~~~G~Y~l~F~t~~Yf~~ 55 (74) T 1oo2_A 29 IHNLITEQQFPAGVYRVEFDTKAYWTN 55 (74) T ss_dssp CTTCSCGGGCCSEEEEEEECHHHHHHH T ss_pred CCCCCCCCCCCCCEEEEEEEHHHHHHH T ss_conf 867567453568109999976898986 No 6 >2k1g_A Solution Nmr Structure Of Lipoprotein Spr {Escherichia Coli K12.} (A:) Probab=8.39 E-value=1.5e+02 Score=14.04 Aligned_cols=14 Identities=21% Similarity=0.601 Sum_probs=10.8 Q ss_pred EEEEHHHHHHHHHH Q ss_conf 88501358999999 Q 537021.9.peg.1 22 FSFDCAGYFDWLLV 35 (42) Q Consensus 22 fsfdcagyfdwllv 35 (42) .+|||.|+.-|..- T Consensus 29 ~g~DCsglv~~~~~ 42 (135) T 2k1g_A 29 KGIDCSGFVQRTFR 42 (135) T ss_dssp TBCCHHHHHHHHHH T ss_pred CCEEHHHHHHHHHH T ss_conf 84407689999999 No 7 >>3dvo_A Sgrair restriction enzyme; restriction enzyme/DNA complex; HET: DNA; 1.89A {Streptomyces griseus} PDB: 3dpg_A* 3dw9_A* (A:16-338) Probab=7.52 E-value=1.3e+02 Score=14.36 Aligned_cols=14 Identities=57% Similarity=0.570 Sum_probs=10.1 Q ss_pred EEEEEHHHHCCCCE Q ss_conf 30000010000323 Q 537021.9.peg.1 7 KDVAFKTSLRSFPI 20 (42) Q Consensus 7 kdvafktslrsfpi 20 (42) -.||||.||||-.. T Consensus 221 lavafkrslrsdrl 234 (323) T 3dvo_A 221 LAVAFKRSLRSDRL 234 (323) T ss_dssp EEEEECSBCCGGGG T ss_pred EHHHHHHHHHHCCH T ss_conf 04677754410101 No 8 >>2hbw_A NLP/P60 protein; YP_323898.1, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics; HET: UNL; 1.05A {Anabaena variabilis atcc 29413} PDB: 2evr_A 2fg0_A (A:86-235) Probab=6.70 E-value=2e+02 Score=13.31 Aligned_cols=14 Identities=29% Similarity=0.657 Sum_probs=10.8 Q ss_pred EEEEHHHHHHHHHH Q ss_conf 88501358999999 Q 537021.9.peg.1 22 FSFDCAGYFDWLLV 35 (42) Q Consensus 22 fsfdcagyfdwllv 35 (42) ..|||.|+.-|++- T Consensus 38 ~g~DCsglv~~~~~ 51 (150) T 2hbw_A 38 PNYDCSGLXQAAFV 51 (150) T ss_dssp SSCCHHHHHHHHHH T ss_pred CCCCHHHHHHHHHH T ss_conf 99867999999999 No 9 >>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} (A:79-150) Probab=6.51 E-value=1.9e+02 Score=13.49 Aligned_cols=14 Identities=21% Similarity=0.178 Sum_probs=9.7 Q ss_pred CEEEEEEHHHHHHH Q ss_conf 23788501358999 Q 537021.9.peg.1 19 PIQFSFDCAGYFDW 32 (42) Q Consensus 19 piqfsfdcagyfdw 32 (42) |-.+.+||+|---= T Consensus 1 p~~pGwD~~GlpiE 14 (72) T 1ile_A 1 PRRAGWDTHGLPVE 14 (72) T ss_dssp CCEEEECCCHHHHH T ss_pred CCCCCCCCCHHHHH T ss_conf 99885163779999 No 10 >>2h6u_A 5-hydroxyisourate hydrolase (formerly known AS Trp, transthyretin related protein)...; URIC acid degradation, allantoin; 1.70A {Danio rerio} PDB: 2h1x_A (A:24-98) Probab=6.24 E-value=2.5e+02 Score=12.88 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=17.5 Q ss_pred EEEEEEEHHHHCCCCEEEEEEHHHHHHH Q ss_conf 7530000010000323788501358999 Q 537021.9.peg.1 5 RVKDVAFKTSLRSFPIQFSFDCAGYFDW 32 (42) Q Consensus 5 rvkdvafktslrsfpiqfsfdcagyfdw 32 (42) |+++..-...+.+=.-+..|++..||.- T Consensus 29 R~~~l~~~~~~~~G~Y~l~F~t~~Yf~~ 56 (75) T 2h6u_A 29 RCPGLITKENFIAGVYKMRFETGKYWDA 56 (75) T ss_dssp BCCCSCCTTTCCSEEEEEEECHHHHHHH T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHHHH T ss_conf 5276677555676149999957998874 Done!