Query 537021.9.peg.128_1
Match_columns 42
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 24 01:50:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_128.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyt_E Voltage-dependent L-typ 22.7 21 0.00089 17.4 0.8 13 22-34 9-21 (26)
2 3m8e_A Putative DNA-binding pr 13.2 9.2 0.00039 19.2 -2.9 11 21-31 81-91 (124)
3 3gt2_A Putative uncharacterize 9.0 1.1E+02 0.0048 13.8 1.5 13 22-34 52-64 (142)
4 3if4_A Integron cassette prote 7.5 1.5E+02 0.0063 13.2 1.7 12 28-39 75-86 (119)
5 2jyx_A Lipoprotein SPR; soluti 7.5 1.5E+02 0.0063 13.2 1.7 12 23-34 30-41 (136)
6 3dvo_A Sgrair restriction enzy 7.2 94 0.004 14.2 0.5 14 7-20 236-249 (338)
7 3ne0_A Resuscitation promoting 5.3 2E+02 0.0085 12.6 1.5 13 22-34 121-133 (214)
8 2gmf_A Granulocyte-macrophage 4.6 56 0.0024 15.3 -1.9 18 10-27 105-122 (127)
9 3kdv_A DDRB, DNA damage respon 4.6 43 0.0018 15.9 -2.6 17 19-35 51-67 (184)
10 3i86_A Putative uncharacterize 4.5 2.3E+02 0.0097 12.3 1.8 14 21-34 47-60 (141)
No 1
>1vyt_E Voltage-dependent L-type calcium channel alpha-1C subunit; transport protein, ION transport/complex, calcium channel beta subunit, AID doamin; 2.6A {Rattus norvegicus} SCOP: j.68.1.1
Probab=22.65 E-value=21 Score=17.44 Aligned_cols=13 Identities=38% Similarity=0.971 Sum_probs=9.6
Q ss_pred EEEEHHHHHHHHH
Q ss_conf 8850135899999
Q 537021.9.peg.1 22 FSFDCAGYFDWLL 34 (42)
Q Consensus 22 fsfdcagyfdwll 34 (42)
..-|-.||.||+-
T Consensus 9 ~eedl~gym~wit 21 (26)
T 1vyt_E 9 LEEDLKGYLDWIT 21 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 8899999999998
No 2
>3m8e_A Putative DNA-binding protein; winged helix-turn-helix, ARSR family; 2.00A {Bacillus thuringiensis} PDB: 3m9a_A 3m8f_A
Probab=13.18 E-value=9.2 Score=19.24 Aligned_cols=11 Identities=64% Similarity=1.084 Sum_probs=8.0
Q ss_pred EEEEEHHHHHH
Q ss_conf 78850135899
Q 537021.9.peg.1 21 QFSFDCAGYFD 31 (42)
Q Consensus 21 qfsfdcagyfd 31 (42)
--||-||||.|
T Consensus 81 vnsfycagyid 91 (124)
T 3m8e_A 81 VNSFYCAGYID 91 (124)
T ss_dssp HHHHHHTTSEE
T ss_pred EEEEEEEEECC
T ss_conf 50135510124
No 3
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=9.00 E-value=1.1e+02 Score=13.82 Aligned_cols=13 Identities=23% Similarity=0.662 Sum_probs=10.6
Q ss_pred EEEEHHHHHHHHH
Q ss_conf 8850135899999
Q 537021.9.peg.1 22 FSFDCAGYFDWLL 34 (42)
Q Consensus 22 fsfdcagyfdwll 34 (42)
..|||.|+-.|..
T Consensus 52 ~GfDCSGlv~~~y 64 (142)
T 3gt2_A 52 VGFDASGLMQYAY 64 (142)
T ss_dssp EEBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHH
T ss_conf 7451499999999
No 4
>3if4_A Integron cassette protein HFX_CASS5; integron cassette protein mobIle metagenome structural genomics PSI-2 protein structure initiative midwest center for structural genomics; HET: MSE; 2.18A {Unidentified}
Probab=7.51 E-value=1.5e+02 Score=13.23 Aligned_cols=12 Identities=33% Similarity=0.747 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHH
Q ss_conf 589999999998
Q 537021.9.peg.1 28 GYFDWLLVILKR 39 (42)
Q Consensus 28 gyfdwllvilkr 39 (42)
.|++|+.-|++-
T Consensus 75 sys~W~~qI~~a 86 (119)
T 3if4_A 75 SYAQWLQQIFAA 86 (119)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
T ss_conf 199999999999
No 5
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=7.48 E-value=1.5e+02 Score=13.22 Aligned_cols=12 Identities=25% Similarity=0.847 Sum_probs=9.8
Q ss_pred EEEHHHHHHHHH
Q ss_conf 850135899999
Q 537021.9.peg.1 23 SFDCAGYFDWLL 34 (42)
Q Consensus 23 sfdcagyfdwll 34 (42)
.|||.|..-|.+
T Consensus 30 g~DCSGlv~~vy 41 (136)
T 2jyx_A 30 GIDCSGFVQRTF 41 (136)
T ss_dssp EECHHHHHHHHH
T ss_pred CCCCHHHHHHHH
T ss_conf 930189999999
No 6
>3dvo_A Sgrair restriction enzyme; restriction enzyme/DNA complex; HET: DNA; 1.89A {Streptomyces griseus} PDB: 3dpg_A* 3dw9_A*
Probab=7.17 E-value=94 Score=14.22 Aligned_cols=14 Identities=57% Similarity=0.570 Sum_probs=10.1
Q ss_pred EEEEEHHHHCCCCE
Q ss_conf 30000010000323
Q 537021.9.peg.1 7 KDVAFKTSLRSFPI 20 (42)
Q Consensus 7 kdvafktslrsfpi 20 (42)
-.||||.||||-..
T Consensus 236 lavafkrslrsdrl 249 (338)
T 3dvo_A 236 LAVAFKRSLRSDRL 249 (338)
T ss_dssp EEEEECSBCCGGGG
T ss_pred EHHHHHHHHHHCCH
T ss_conf 04677754410101
No 7
>3ne0_A Resuscitation promoting factor interacting protei; cell WALL, peptidoglycan, hydrolase; 1.00A {Mycobacterium tuberculosis} PDB: 2xiv_A*
Probab=5.28 E-value=2e+02 Score=12.57 Aligned_cols=13 Identities=31% Similarity=0.807 Sum_probs=10.5
Q ss_pred EEEEHHHHHHHHH
Q ss_conf 8850135899999
Q 537021.9.peg.1 22 FSFDCAGYFDWLL 34 (42)
Q Consensus 22 fsfdcagyfdwll 34 (42)
..|||.|+--|.+
T Consensus 121 ~G~DCSGlv~~~y 133 (214)
T 3ne0_A 121 VGFDCSGLVLYSF 133 (214)
T ss_dssp EEBCHHHHHHHHH
T ss_pred CCEEHHHHHHHHH
T ss_conf 4173599999999
No 8
>2gmf_A Granulocyte-macrophage colony-stimulating factor; granulocyte-macrophage colony stimulating growth factor; 2.40A {Homo sapiens} SCOP: a.26.1.2 PDB: 1csg_A 3cxe_B*
Probab=4.62 E-value=56 Score=15.34 Aligned_cols=18 Identities=39% Similarity=0.857 Sum_probs=13.0
Q ss_pred EEHHHHCCCCEEEEEEHH
Q ss_conf 000100003237885013
Q 537021.9.peg.1 10 AFKTSLRSFPIQFSFDCA 27 (42)
Q Consensus 10 afktslrsfpiqfsfdca 27 (42)
.||.+|..|-....|||-
T Consensus 105 sFk~nLk~FLf~IpfdCW 122 (127)
T 2gmf_A 105 SFKENLKDFLLVIPFDCW 122 (127)
T ss_dssp HHHHHHHHHHTTSCSSCC
T ss_pred HHHHHHHHHHHCCCCCCC
T ss_conf 999999878724872335
No 9
>3kdv_A DDRB, DNA damage response B protein; anti-parallel beta-barrel, pentamer, DNA binding protein; HET: DNA; 2.80A {Deinococcus geothermalis dsm 11300}
Probab=4.57 E-value=43 Score=15.92 Aligned_cols=17 Identities=35% Similarity=0.729 Sum_probs=13.5
Q ss_pred CEEEEEEHHHHHHHHHH
Q ss_conf 23788501358999999
Q 537021.9.peg.1 19 PIQFSFDCAGYFDWLLV 35 (42)
Q Consensus 19 piqfsfdcagyfdwllv 35 (42)
-.||..+|.--|||-|.
T Consensus 51 GyqfPlene~dFDWsli 67 (184)
T 3kdv_A 51 GYQFPLENEPDFDWSLI 67 (184)
T ss_dssp CCCCCGGGGGGBCGGGG
T ss_pred CEECCCCCCCCCCHHHC
T ss_conf 56533366777555340
No 10
>3i86_A Putative uncharacterized protein; alpha and beta protein, hypothetical cysteine protease, HYDR; 2.40A {Mycobacterium avium subsp}
Probab=4.54 E-value=2.3e+02 Score=12.29 Aligned_cols=14 Identities=29% Similarity=0.719 Sum_probs=11.1
Q ss_pred EEEEEHHHHHHHHH
Q ss_conf 78850135899999
Q 537021.9.peg.1 21 QFSFDCAGYFDWLL 34 (42)
Q Consensus 21 qfsfdcagyfdwll 34 (42)
...|||.|.--|.+
T Consensus 47 ~~G~DCSglv~~~y 60 (141)
T 3i86_A 47 ITGFDCSGLMRYGF 60 (141)
T ss_dssp CEEBCHHHHHHHHH
T ss_pred CCCEEHHHHHHHHH
T ss_conf 85272099999999
Done!