Query 537021.9.peg.128_1 Match_columns 42 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 24 01:50:41 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_128.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1vyt_E Voltage-dependent L-typ 22.7 21 0.00089 17.4 0.8 13 22-34 9-21 (26) 2 3m8e_A Putative DNA-binding pr 13.2 9.2 0.00039 19.2 -2.9 11 21-31 81-91 (124) 3 3gt2_A Putative uncharacterize 9.0 1.1E+02 0.0048 13.8 1.5 13 22-34 52-64 (142) 4 3if4_A Integron cassette prote 7.5 1.5E+02 0.0063 13.2 1.7 12 28-39 75-86 (119) 5 2jyx_A Lipoprotein SPR; soluti 7.5 1.5E+02 0.0063 13.2 1.7 12 23-34 30-41 (136) 6 3dvo_A Sgrair restriction enzy 7.2 94 0.004 14.2 0.5 14 7-20 236-249 (338) 7 3ne0_A Resuscitation promoting 5.3 2E+02 0.0085 12.6 1.5 13 22-34 121-133 (214) 8 2gmf_A Granulocyte-macrophage 4.6 56 0.0024 15.3 -1.9 18 10-27 105-122 (127) 9 3kdv_A DDRB, DNA damage respon 4.6 43 0.0018 15.9 -2.6 17 19-35 51-67 (184) 10 3i86_A Putative uncharacterize 4.5 2.3E+02 0.0097 12.3 1.8 14 21-34 47-60 (141) No 1 >1vyt_E Voltage-dependent L-type calcium channel alpha-1C subunit; transport protein, ION transport/complex, calcium channel beta subunit, AID doamin; 2.6A {Rattus norvegicus} SCOP: j.68.1.1 Probab=22.65 E-value=21 Score=17.44 Aligned_cols=13 Identities=38% Similarity=0.971 Sum_probs=9.6 Q ss_pred EEEEHHHHHHHHH Q ss_conf 8850135899999 Q 537021.9.peg.1 22 FSFDCAGYFDWLL 34 (42) Q Consensus 22 fsfdcagyfdwll 34 (42) ..-|-.||.||+- T Consensus 9 ~eedl~gym~wit 21 (26) T 1vyt_E 9 LEEDLKGYLDWIT 21 (26) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 8899999999998 No 2 >3m8e_A Putative DNA-binding protein; winged helix-turn-helix, ARSR family; 2.00A {Bacillus thuringiensis} PDB: 3m9a_A 3m8f_A Probab=13.18 E-value=9.2 Score=19.24 Aligned_cols=11 Identities=64% Similarity=1.084 Sum_probs=8.0 Q ss_pred EEEEEHHHHHH Q ss_conf 78850135899 Q 537021.9.peg.1 21 QFSFDCAGYFD 31 (42) Q Consensus 21 qfsfdcagyfd 31 (42) --||-||||.| T Consensus 81 vnsfycagyid 91 (124) T 3m8e_A 81 VNSFYCAGYID 91 (124) T ss_dssp HHHHHHTTSEE T ss_pred EEEEEEEEECC T ss_conf 50135510124 No 3 >3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp} Probab=9.00 E-value=1.1e+02 Score=13.82 Aligned_cols=13 Identities=23% Similarity=0.662 Sum_probs=10.6 Q ss_pred EEEEHHHHHHHHH Q ss_conf 8850135899999 Q 537021.9.peg.1 22 FSFDCAGYFDWLL 34 (42) Q Consensus 22 fsfdcagyfdwll 34 (42) ..|||.|+-.|.. T Consensus 52 ~GfDCSGlv~~~y 64 (142) T 3gt2_A 52 VGFDASGLMQYAY 64 (142) T ss_dssp EEBCHHHHHHHHH T ss_pred CCCCCHHHHHHHH T ss_conf 7451499999999 No 4 >3if4_A Integron cassette protein HFX_CASS5; integron cassette protein mobIle metagenome structural genomics PSI-2 protein structure initiative midwest center for structural genomics; HET: MSE; 2.18A {Unidentified} Probab=7.51 E-value=1.5e+02 Score=13.23 Aligned_cols=12 Identities=33% Similarity=0.747 Sum_probs=9.9 Q ss_pred HHHHHHHHHHHH Q ss_conf 589999999998 Q 537021.9.peg.1 28 GYFDWLLVILKR 39 (42) Q Consensus 28 gyfdwllvilkr 39 (42) .|++|+.-|++- T Consensus 75 sys~W~~qI~~a 86 (119) T 3if4_A 75 SYAQWLQQIFAA 86 (119) T ss_dssp CHHHHHHHHHHH T ss_pred CHHHHHHHHHHH T ss_conf 199999999999 No 5 >2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A Probab=7.48 E-value=1.5e+02 Score=13.22 Aligned_cols=12 Identities=25% Similarity=0.847 Sum_probs=9.8 Q ss_pred EEEHHHHHHHHH Q ss_conf 850135899999 Q 537021.9.peg.1 23 SFDCAGYFDWLL 34 (42) Q Consensus 23 sfdcagyfdwll 34 (42) .|||.|..-|.+ T Consensus 30 g~DCSGlv~~vy 41 (136) T 2jyx_A 30 GIDCSGFVQRTF 41 (136) T ss_dssp EECHHHHHHHHH T ss_pred CCCCHHHHHHHH T ss_conf 930189999999 No 6 >3dvo_A Sgrair restriction enzyme; restriction enzyme/DNA complex; HET: DNA; 1.89A {Streptomyces griseus} PDB: 3dpg_A* 3dw9_A* Probab=7.17 E-value=94 Score=14.22 Aligned_cols=14 Identities=57% Similarity=0.570 Sum_probs=10.1 Q ss_pred EEEEEHHHHCCCCE Q ss_conf 30000010000323 Q 537021.9.peg.1 7 KDVAFKTSLRSFPI 20 (42) Q Consensus 7 kdvafktslrsfpi 20 (42) -.||||.||||-.. T Consensus 236 lavafkrslrsdrl 249 (338) T 3dvo_A 236 LAVAFKRSLRSDRL 249 (338) T ss_dssp EEEEECSBCCGGGG T ss_pred EHHHHHHHHHHCCH T ss_conf 04677754410101 No 7 >3ne0_A Resuscitation promoting factor interacting protei; cell WALL, peptidoglycan, hydrolase; 1.00A {Mycobacterium tuberculosis} PDB: 2xiv_A* Probab=5.28 E-value=2e+02 Score=12.57 Aligned_cols=13 Identities=31% Similarity=0.807 Sum_probs=10.5 Q ss_pred EEEEHHHHHHHHH Q ss_conf 8850135899999 Q 537021.9.peg.1 22 FSFDCAGYFDWLL 34 (42) Q Consensus 22 fsfdcagyfdwll 34 (42) ..|||.|+--|.+ T Consensus 121 ~G~DCSGlv~~~y 133 (214) T 3ne0_A 121 VGFDCSGLVLYSF 133 (214) T ss_dssp EEBCHHHHHHHHH T ss_pred CCEEHHHHHHHHH T ss_conf 4173599999999 No 8 >2gmf_A Granulocyte-macrophage colony-stimulating factor; granulocyte-macrophage colony stimulating growth factor; 2.40A {Homo sapiens} SCOP: a.26.1.2 PDB: 1csg_A 3cxe_B* Probab=4.62 E-value=56 Score=15.34 Aligned_cols=18 Identities=39% Similarity=0.857 Sum_probs=13.0 Q ss_pred EEHHHHCCCCEEEEEEHH Q ss_conf 000100003237885013 Q 537021.9.peg.1 10 AFKTSLRSFPIQFSFDCA 27 (42) Q Consensus 10 afktslrsfpiqfsfdca 27 (42) .||.+|..|-....|||- T Consensus 105 sFk~nLk~FLf~IpfdCW 122 (127) T 2gmf_A 105 SFKENLKDFLLVIPFDCW 122 (127) T ss_dssp HHHHHHHHHHTTSCSSCC T ss_pred HHHHHHHHHHHCCCCCCC T ss_conf 999999878724872335 No 9 >3kdv_A DDRB, DNA damage response B protein; anti-parallel beta-barrel, pentamer, DNA binding protein; HET: DNA; 2.80A {Deinococcus geothermalis dsm 11300} Probab=4.57 E-value=43 Score=15.92 Aligned_cols=17 Identities=35% Similarity=0.729 Sum_probs=13.5 Q ss_pred CEEEEEEHHHHHHHHHH Q ss_conf 23788501358999999 Q 537021.9.peg.1 19 PIQFSFDCAGYFDWLLV 35 (42) Q Consensus 19 piqfsfdcagyfdwllv 35 (42) -.||..+|.--|||-|. T Consensus 51 GyqfPlene~dFDWsli 67 (184) T 3kdv_A 51 GYQFPLENEPDFDWSLI 67 (184) T ss_dssp CCCCCGGGGGGBCGGGG T ss_pred CEECCCCCCCCCCHHHC T ss_conf 56533366777555340 No 10 >3i86_A Putative uncharacterized protein; alpha and beta protein, hypothetical cysteine protease, HYDR; 2.40A {Mycobacterium avium subsp} Probab=4.54 E-value=2.3e+02 Score=12.29 Aligned_cols=14 Identities=29% Similarity=0.719 Sum_probs=11.1 Q ss_pred EEEEEHHHHHHHHH Q ss_conf 78850135899999 Q 537021.9.peg.1 21 QFSFDCAGYFDWLL 34 (42) Q Consensus 21 qfsfdcagyfdwll 34 (42) ...|||.|.--|.+ T Consensus 47 ~~G~DCSglv~~~y 60 (141) T 3i86_A 47 ITGFDCSGLMRYGF 60 (141) T ss_dssp CEEBCHHHHHHHHH T ss_pred CCCEEHHHHHHHHH T ss_conf 85272099999999 Done!