Query         537021.9.peg.128_1
Match_columns 42
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Tue May 24 00:12:22 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_128.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1r7ma1 d.95.2.1 (A:3-120) DNA  12.6      54  0.0039   14.2   2.2   25   17-41     53-77  (118)
  2 d2evra2 d.3.1.16 (A:87-234) Ce  11.0      37  0.0027   15.1   0.9   14   22-35     36-49  (148)
  3 d1iyjb4 b.40.4.3 (B:2732-2760,   5.8      75  0.0055   13.5   0.5   11   14-24     21-31  (111)
  4 d1knva_ c.52.1.7 (A:) Restrict   5.2      72  0.0053   13.6   0.1   10    8-17    191-200 (290)
  5 d1cfra_ c.52.1.7 (A:) Restrict   5.0      78  0.0057   13.4   0.2   10    8-17    186-195 (283)
  6 d2gmfa_ a.26.1.2 (A:) Granuloc   4.6      32  0.0024   15.3  -1.9   18   10-27    102-119 (121)
  7 d1b5ta_ c.1.23.1 (A:) Methylen   4.5 1.3E+02  0.0097   12.3   1.2   22   17-38    159-180 (275)
  8 d1jswa_ a.127.1.1 (A:) L-aspar   3.5 1.6E+02   0.012   11.9   0.9   27   14-40    192-218 (459)
  9 d1ufia_ a.30.4.1 (A:) Dimerisa   3.5 1.2E+02   0.009   12.4   0.3   10   12-21     18-27  (48)
 10 d1j3ua_ a.127.1.1 (A:) L-aspar   3.3 1.7E+02   0.013   11.7   0.9   28   13-40    184-211 (462)

No 1  
>d1r7ma1 d.95.2.1 (A:3-120) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.59  E-value=54  Score=14.25  Aligned_cols=25  Identities=20%  Similarity=0.550  Sum_probs=21.2

Q ss_pred             CCCEEEEEEHHHHHHHHHHHHHHHC
Q ss_conf             0323788501358999999999861
Q 537021.9.peg.1   17 SFPIQFSFDCAGYFDWLLVILKRLV   41 (42)
Q Consensus        17 sfpiqfsfdcagyfdwllvilkrlv   41 (42)
                      .+-++|++.-..|.+|+.-+++.++
T Consensus        53 r~r~~~~~~~~~Yl~~ly~~f~~~~   77 (118)
T d1r7ma1          53 TYCMQFEWKNKAYMDHVCLLYDQWV   77 (118)
T ss_dssp             CBEEEEEESCHHHHHHHHHHTGGGC
T ss_pred             CEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf             3899993364889999999999875


No 2  
>d2evra2 d.3.1.16 (A:87-234) Cell wall-associated hydrolase Spr C-terminal domain {Nostoc punctiforme [TaxId: 272131]}
Probab=11.03  E-value=37  Score=15.07  Aligned_cols=14  Identities=21%  Similarity=0.617  Sum_probs=11.1

Q ss_pred             EEEEHHHHHHHHHH
Q ss_conf             88501358999999
Q 537021.9.peg.1   22 FSFDCAGYFDWLLV   35 (42)
Q Consensus        22 fsfdcagyfdwllv   35 (42)
                      -.|||.|+.-|.+-
T Consensus        36 ~g~DCSGlv~~~y~   49 (148)
T d2evra2          36 PNYDCSGLMQAAFA   49 (148)
T ss_dssp             SSCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH
T ss_conf             99778999999999


No 3  
>d1iyjb4 b.40.4.3 (B:2732-2760,B:2898-2979) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.76  E-value=75  Score=13.53  Aligned_cols=11  Identities=27%  Similarity=0.773  Sum_probs=8.2

Q ss_pred             HHCCCCEEEEE
Q ss_conf             00003237885
Q 537021.9.peg.1   14 SLRSFPIQFSF   24 (42)
Q Consensus        14 slrsfpiqfsf   24 (42)
                      -+|++|+|+-.
T Consensus        21 ~~r~yp~~~~~   31 (111)
T d1iyjb4          21 VQRVYPLQWVW   31 (111)
T ss_dssp             CCEECCCEEEE
T ss_pred             EEECCCHHHHH
T ss_conf             98415278754


No 4  
>d1knva_ c.52.1.7 (A:) Restriction endonuclease Bse634I {Bacillus stearothermophilus [TaxId: 1422]}
Probab=5.15  E-value=72  Score=13.61  Aligned_cols=10  Identities=60%  Similarity=0.767  Sum_probs=5.7

Q ss_pred             EEEEHHHHCC
Q ss_conf             0000010000
Q 537021.9.peg.1    8 DVAFKTSLRS   17 (42)
Q Consensus         8 dvafktslrs   17 (42)
                      -+++|||+|+
T Consensus       191 ~lslKtSlRP  200 (290)
T d1knva_         191 GVGLKTSLRP  200 (290)
T ss_dssp             EEEEESCCCH
T ss_pred             EEEECCCCCC
T ss_conf             0021036685


No 5  
>d1cfra_ c.52.1.7 (A:) Restriction endonuclease Cfr10I {Citrobacter freundii [TaxId: 546]}
Probab=5.01  E-value=78  Score=13.44  Aligned_cols=10  Identities=30%  Similarity=0.428  Sum_probs=5.8

Q ss_pred             EEEEHHHHCC
Q ss_conf             0000010000
Q 537021.9.peg.1    8 DVAFKTSLRS   17 (42)
Q Consensus         8 dvafktslrs   17 (42)
                      -+++|||+|+
T Consensus       186 ~islKtSlRP  195 (283)
T d1cfra_         186 FLSVKTTFRP  195 (283)
T ss_dssp             EEEECSSCCH
T ss_pred             EEEEECCCCC
T ss_conf             5553036685


No 6  
>d2gmfa_ a.26.1.2 (A:) Granulocyte-macrophage colony-stimulating factor (GM-CSF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.63  E-value=32  Score=15.35  Aligned_cols=18  Identities=39%  Similarity=0.857  Sum_probs=12.6

Q ss_pred             EEHHHHCCCCEEEEEEHH
Q ss_conf             000100003237885013
Q 537021.9.peg.1   10 AFKTSLRSFPIQFSFDCA   27 (42)
Q Consensus        10 afktslrsfpiqfsfdca   27 (42)
                      .||.+|..|-....|||-
T Consensus       102 sFk~nLk~FLf~IpfdCW  119 (121)
T d2gmfa_         102 SFKENLKDFLLVIPFDCW  119 (121)
T ss_dssp             HHHHHHHHHHTTSCSSCC
T ss_pred             HHHHHHHHHHHCCCCCCC
T ss_conf             999999877613773467


No 7  
>d1b5ta_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Escherichia coli [TaxId: 562]}
Probab=4.51  E-value=1.3e+02  Score=12.28  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=16.8

Q ss_pred             CCCEEEEEEHHHHHHHHHHHHH
Q ss_conf             0323788501358999999999
Q 537021.9.peg.1   17 SFPIQFSFDCAGYFDWLLVILK   38 (42)
Q Consensus        17 sfpiqfsfdcagyfdwllvilk   38 (42)
                      .+--|+.||..-|.+|+--+-+
T Consensus       159 fiiTQ~~fD~~~~~~~~~~~~~  180 (275)
T d1b5ta_         159 RAITQFFFDVESYLRFRDRCVS  180 (275)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHH
T ss_pred             EEEEEEEECHHHHHHHHHHHHH
T ss_conf             0543116529999999999997


No 8  
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]}
Probab=3.51  E-value=1.6e+02  Score=11.88  Aligned_cols=27  Identities=11%  Similarity=0.151  Sum_probs=20.2

Q ss_pred             HHCCCCEEEEEEHHHHHHHHHHHHHHH
Q ss_conf             000032378850135899999999986
Q 537021.9.peg.1   14 SLRSFPIQFSFDCAGYFDWLLVILKRL   40 (42)
Q Consensus        14 slrsfpiqfsfdcagyfdwllvilkrl   40 (42)
                      .-..-|+.|.+.+++|.+.+.--++|+
T Consensus       192 lQ~A~PiTfG~~~~~~~~~l~r~~~rl  218 (459)
T d1jswa_         192 LQDAVPMTLGQEFRAFSILLKEEVKNI  218 (459)
T ss_dssp             GSCCCEEEHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             063767416999999789998789999


No 9  
>d1ufia_ a.30.4.1 (A:) Dimerisation domain of CENP-B {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.49  E-value=1.2e+02  Score=12.44  Aligned_cols=10  Identities=60%  Similarity=0.886  Sum_probs=7.3

Q ss_pred             HHHHCCCCEE
Q ss_conf             0100003237
Q 537021.9.peg.1   12 KTSLRSFPIQ   21 (42)
Q Consensus        12 ktslrsfpiq   21 (42)
                      |.-|.||||.
T Consensus        18 kryltsfpid   27 (48)
T d1ufia_          18 KRYLTSFPID   27 (48)
T ss_dssp             HHHHTTSCCC
T ss_pred             HHHHHCCCCH
T ss_conf             9998328834


No 10 
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]}
Probab=3.26  E-value=1.7e+02  Score=11.70  Aligned_cols=28  Identities=14%  Similarity=0.228  Sum_probs=21.5

Q ss_pred             HHHCCCCEEEEEEHHHHHHHHHHHHHHH
Q ss_conf             1000032378850135899999999986
Q 537021.9.peg.1   13 TSLRSFPIQFSFDCAGYFDWLLVILKRL   40 (42)
Q Consensus        13 tslrsfpiqfsfdcagyfdwllvilkrl   40 (42)
                      ..-..-|+.|.+-.++|.+.+.--+.||
T Consensus       184 HlQ~A~PiTfG~~~~~~~~~l~r~~~RL  211 (462)
T d1j3ua_         184 HLQDAVPILLGQEFEAYARVIARDIERI  211 (462)
T ss_dssp             TTEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCCCEEHHHHHHHHHHHHHHHHHHH
T ss_conf             4764233668988999999999998999


Done!