Query 537021.9.peg.128_1 Match_columns 42 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Tue May 24 00:12:22 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_128.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1r7ma1 d.95.2.1 (A:3-120) DNA 12.6 54 0.0039 14.2 2.2 25 17-41 53-77 (118) 2 d2evra2 d.3.1.16 (A:87-234) Ce 11.0 37 0.0027 15.1 0.9 14 22-35 36-49 (148) 3 d1iyjb4 b.40.4.3 (B:2732-2760, 5.8 75 0.0055 13.5 0.5 11 14-24 21-31 (111) 4 d1knva_ c.52.1.7 (A:) Restrict 5.2 72 0.0053 13.6 0.1 10 8-17 191-200 (290) 5 d1cfra_ c.52.1.7 (A:) Restrict 5.0 78 0.0057 13.4 0.2 10 8-17 186-195 (283) 6 d2gmfa_ a.26.1.2 (A:) Granuloc 4.6 32 0.0024 15.3 -1.9 18 10-27 102-119 (121) 7 d1b5ta_ c.1.23.1 (A:) Methylen 4.5 1.3E+02 0.0097 12.3 1.2 22 17-38 159-180 (275) 8 d1jswa_ a.127.1.1 (A:) L-aspar 3.5 1.6E+02 0.012 11.9 0.9 27 14-40 192-218 (459) 9 d1ufia_ a.30.4.1 (A:) Dimerisa 3.5 1.2E+02 0.009 12.4 0.3 10 12-21 18-27 (48) 10 d1j3ua_ a.127.1.1 (A:) L-aspar 3.3 1.7E+02 0.013 11.7 0.9 28 13-40 184-211 (462) No 1 >d1r7ma1 d.95.2.1 (A:3-120) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=12.59 E-value=54 Score=14.25 Aligned_cols=25 Identities=20% Similarity=0.550 Sum_probs=21.2 Q ss_pred CCCEEEEEEHHHHHHHHHHHHHHHC Q ss_conf 0323788501358999999999861 Q 537021.9.peg.1 17 SFPIQFSFDCAGYFDWLLVILKRLV 41 (42) Q Consensus 17 sfpiqfsfdcagyfdwllvilkrlv 41 (42) .+-++|++.-..|.+|+.-+++.++ T Consensus 53 r~r~~~~~~~~~Yl~~ly~~f~~~~ 77 (118) T d1r7ma1 53 TYCMQFEWKNKAYMDHVCLLYDQWV 77 (118) T ss_dssp CBEEEEEESCHHHHHHHHHHTGGGC T ss_pred CEEEEEECCHHHHHHHHHHHHHHHC T ss_conf 3899993364889999999999875 No 2 >d2evra2 d.3.1.16 (A:87-234) Cell wall-associated hydrolase Spr C-terminal domain {Nostoc punctiforme [TaxId: 272131]} Probab=11.03 E-value=37 Score=15.07 Aligned_cols=14 Identities=21% Similarity=0.617 Sum_probs=11.1 Q ss_pred EEEEHHHHHHHHHH Q ss_conf 88501358999999 Q 537021.9.peg.1 22 FSFDCAGYFDWLLV 35 (42) Q Consensus 22 fsfdcagyfdwllv 35 (42) -.|||.|+.-|.+- T Consensus 36 ~g~DCSGlv~~~y~ 49 (148) T d2evra2 36 PNYDCSGLMQAAFA 49 (148) T ss_dssp SSCCHHHHHHHHHH T ss_pred CCCCHHHHHHHHHH T ss_conf 99778999999999 No 3 >d1iyjb4 b.40.4.3 (B:2732-2760,B:2898-2979) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=5.76 E-value=75 Score=13.53 Aligned_cols=11 Identities=27% Similarity=0.773 Sum_probs=8.2 Q ss_pred HHCCCCEEEEE Q ss_conf 00003237885 Q 537021.9.peg.1 14 SLRSFPIQFSF 24 (42) Q Consensus 14 slrsfpiqfsf 24 (42) -+|++|+|+-. T Consensus 21 ~~r~yp~~~~~ 31 (111) T d1iyjb4 21 VQRVYPLQWVW 31 (111) T ss_dssp CCEECCCEEEE T ss_pred EEECCCHHHHH T ss_conf 98415278754 No 4 >d1knva_ c.52.1.7 (A:) Restriction endonuclease Bse634I {Bacillus stearothermophilus [TaxId: 1422]} Probab=5.15 E-value=72 Score=13.61 Aligned_cols=10 Identities=60% Similarity=0.767 Sum_probs=5.7 Q ss_pred EEEEHHHHCC Q ss_conf 0000010000 Q 537021.9.peg.1 8 DVAFKTSLRS 17 (42) Q Consensus 8 dvafktslrs 17 (42) -+++|||+|+ T Consensus 191 ~lslKtSlRP 200 (290) T d1knva_ 191 GVGLKTSLRP 200 (290) T ss_dssp EEEEESCCCH T ss_pred EEEECCCCCC T ss_conf 0021036685 No 5 >d1cfra_ c.52.1.7 (A:) Restriction endonuclease Cfr10I {Citrobacter freundii [TaxId: 546]} Probab=5.01 E-value=78 Score=13.44 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=5.8 Q ss_pred EEEEHHHHCC Q ss_conf 0000010000 Q 537021.9.peg.1 8 DVAFKTSLRS 17 (42) Q Consensus 8 dvafktslrs 17 (42) -+++|||+|+ T Consensus 186 ~islKtSlRP 195 (283) T d1cfra_ 186 FLSVKTTFRP 195 (283) T ss_dssp EEEECSSCCH T ss_pred EEEEECCCCC T ss_conf 5553036685 No 6 >d2gmfa_ a.26.1.2 (A:) Granulocyte-macrophage colony-stimulating factor (GM-CSF) {Human (Homo sapiens) [TaxId: 9606]} Probab=4.63 E-value=32 Score=15.35 Aligned_cols=18 Identities=39% Similarity=0.857 Sum_probs=12.6 Q ss_pred EEHHHHCCCCEEEEEEHH Q ss_conf 000100003237885013 Q 537021.9.peg.1 10 AFKTSLRSFPIQFSFDCA 27 (42) Q Consensus 10 afktslrsfpiqfsfdca 27 (42) .||.+|..|-....|||- T Consensus 102 sFk~nLk~FLf~IpfdCW 119 (121) T d2gmfa_ 102 SFKENLKDFLLVIPFDCW 119 (121) T ss_dssp HHHHHHHHHHTTSCSSCC T ss_pred HHHHHHHHHHHCCCCCCC T ss_conf 999999877613773467 No 7 >d1b5ta_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Escherichia coli [TaxId: 562]} Probab=4.51 E-value=1.3e+02 Score=12.28 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=16.8 Q ss_pred CCCEEEEEEHHHHHHHHHHHHH Q ss_conf 0323788501358999999999 Q 537021.9.peg.1 17 SFPIQFSFDCAGYFDWLLVILK 38 (42) Q Consensus 17 sfpiqfsfdcagyfdwllvilk 38 (42) .+--|+.||..-|.+|+--+-+ T Consensus 159 fiiTQ~~fD~~~~~~~~~~~~~ 180 (275) T d1b5ta_ 159 RAITQFFFDVESYLRFRDRCVS 180 (275) T ss_dssp EEEEEECSCHHHHHHHHHHHHH T ss_pred EEEEEEEECHHHHHHHHHHHHH T ss_conf 0543116529999999999997 No 8 >d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} Probab=3.51 E-value=1.6e+02 Score=11.88 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=20.2 Q ss_pred HHCCCCEEEEEEHHHHHHHHHHHHHHH Q ss_conf 000032378850135899999999986 Q 537021.9.peg.1 14 SLRSFPIQFSFDCAGYFDWLLVILKRL 40 (42) Q Consensus 14 slrsfpiqfsfdcagyfdwllvilkrl 40 (42) .-..-|+.|.+.+++|.+.+.--++|+ T Consensus 192 lQ~A~PiTfG~~~~~~~~~l~r~~~rl 218 (459) T d1jswa_ 192 LQDAVPMTLGQEFRAFSILLKEEVKNI 218 (459) T ss_dssp GSCCCEEEHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 063767416999999789998789999 No 9 >d1ufia_ a.30.4.1 (A:) Dimerisation domain of CENP-B {Human (Homo sapiens) [TaxId: 9606]} Probab=3.49 E-value=1.2e+02 Score=12.44 Aligned_cols=10 Identities=60% Similarity=0.886 Sum_probs=7.3 Q ss_pred HHHHCCCCEE Q ss_conf 0100003237 Q 537021.9.peg.1 12 KTSLRSFPIQ 21 (42) Q Consensus 12 ktslrsfpiq 21 (42) |.-|.||||. T Consensus 18 kryltsfpid 27 (48) T d1ufia_ 18 KRYLTSFPID 27 (48) T ss_dssp HHHHTTSCCC T ss_pred HHHHHCCCCH T ss_conf 9998328834 No 10 >d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} Probab=3.26 E-value=1.7e+02 Score=11.70 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=21.5 Q ss_pred HHHCCCCEEEEEEHHHHHHHHHHHHHHH Q ss_conf 1000032378850135899999999986 Q 537021.9.peg.1 13 TSLRSFPIQFSFDCAGYFDWLLVILKRL 40 (42) Q Consensus 13 tslrsfpiqfsfdcagyfdwllvilkrl 40 (42) ..-..-|+.|.+-.++|.+.+.--+.|| T Consensus 184 HlQ~A~PiTfG~~~~~~~~~l~r~~~RL 211 (462) T d1j3ua_ 184 HLQDAVPILLGQEFEAYARVIARDIERI 211 (462) T ss_dssp TTEEEEEEEHHHHHHHHHHHHHHHHHHH T ss_pred HCCCCCCEEHHHHHHHHHHHHHHHHHHH T ss_conf 4764233668988999999999998999 Done!