RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.128_1
         (42 letters)



>gnl|CDD|185171 PRK15263, PRK15263, putative fimbrial protein StaE; Provisional.
          Length = 196

 Score = 27.4 bits (61), Expect = 0.77
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)

Query: 4  VRVKDVAFKTSLRSFPIQFSFDCAG 28
          V + ++  KT +++F I+FS DCAG
Sbjct: 60 VYISELNAKTKVKTFKIRFS-DCAG 83


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.338    0.148    0.468 

Gapped
Lambda     K      H
   0.267   0.0665    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 675,551
Number of extensions: 22866
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 42
Length of database: 5,994,473
Length adjustment: 16
Effective length of query: 26
Effective length of database: 5,648,745
Effective search space: 146867370
Effective search space used: 146867370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 50 (23.2 bits)