RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= 537021.9.peg.128_1 (42 letters) >gnl|CDD|185171 PRK15263, PRK15263, putative fimbrial protein StaE; Provisional. Length = 196 Score = 27.4 bits (61), Expect = 0.77 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%) Query: 4 VRVKDVAFKTSLRSFPIQFSFDCAG 28 V + ++ KT +++F I+FS DCAG Sbjct: 60 VYISELNAKTKVKTFKIRFS-DCAG 83 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.338 0.148 0.468 Gapped Lambda K H 0.267 0.0665 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 675,551 Number of extensions: 22866 Number of successful extensions: 73 Number of sequences better than 10.0: 1 Number of HSP's gapped: 73 Number of HSP's successfully gapped: 1 Length of query: 42 Length of database: 5,994,473 Length adjustment: 16 Effective length of query: 26 Effective length of database: 5,648,745 Effective search space: 146867370 Effective search space used: 146867370 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.7 bits) S2: 50 (23.2 bits)