BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.15_1
         (47 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.15_1 
          Length = 47

 Score = 89.0 bits (219), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/47 (100%), Positives = 47/47 (100%)

Query: 1  MLLDGIHDFLIFLYFAKYLRESTRAFFSLATLLYLFSSNFFLSDRFL 47
          MLLDGIHDFLIFLYFAKYLRESTRAFFSLATLLYLFSSNFFLSDRFL
Sbjct: 1  MLLDGIHDFLIFLYFAKYLRESTRAFFSLATLLYLFSSNFFLSDRFL 47


>gi|254780896|ref|YP_003065309.1| ABC transporter membrane spanning protein (branched chain amino
           acid) [Candidatus Liberibacter asiaticus str. psy62]
          Length = 351

 Score = 20.0 bits (40), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 17  KYLRESTRAFFSL-ATLLYLFSSNFFLSDRFL 47
           + +R++ +AFFSL  T+++   S F +S  F+
Sbjct: 211 RTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFI 242


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.343    0.153    0.453 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,098
Number of Sequences: 1233
Number of extensions: 712
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 47
length of database: 328,796
effective HSP length: 20
effective length of query: 27
effective length of database: 304,136
effective search space:  8211672
effective search space used:  8211672
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 31 (16.5 bits)