Query 537021.9.peg.166_1
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Tue May 24 10:45:23 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_166.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3063 PilF Tfp pilus assembl 29.6 11 0.00028 19.4 -0.7 10 29-38 103-112 (250)
2 pfam09107 SelB-wing_3 Elongati 23.4 45 0.0012 16.4 1.5 13 16-28 25-37 (50)
3 CHL00038 psbL photosystem II p 17.9 76 0.0019 15.3 1.7 16 2-17 22-37 (38)
4 TIGR02521 type_IV_pilW type IV 16.7 30 0.00076 17.3 -0.6 11 28-38 106-116 (247)
5 pfam09556 RE_HaeIII HaeIII res 16.2 1.1E+02 0.0029 14.5 2.4 23 15-37 168-191 (300)
6 cd05385 SCP_GLIPR-1_like SCP_G 14.0 76 0.0019 15.4 0.9 13 23-35 1-13 (144)
7 PRK00753 psbL photosystem II r 13.2 1.2E+02 0.0031 14.4 1.7 15 3-17 24-38 (39)
8 TIGR01848 PHA_reg_PhaR polyhyd 11.1 1.4E+02 0.0036 14.0 1.6 27 3-29 47-77 (109)
9 KOG3806 consensus 10.7 1.5E+02 0.0039 13.9 1.6 17 18-34 68-84 (177)
10 COG0793 Prc Periplasmic protea 10.4 41 0.001 16.7 -1.4 11 28-38 237-247 (406)
No 1
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.63 E-value=11 Score=19.39 Aligned_cols=10 Identities=60% Similarity=0.946 Sum_probs=7.2
Q ss_pred HHHHHHCCCC
Q ss_conf 9533420689
Q 537021.9.peg.1 29 LDVKNNFGGF 38 (38)
Q Consensus 29 ldvknnfggf 38 (38)
-||-||||+|
T Consensus 103 GdVLNNYG~F 112 (250)
T COG3063 103 GDVLNNYGAF 112 (250)
T ss_pred CCHHHHHHHH
T ss_conf 4055210699
No 2
>pfam09107 SelB-wing_3 Elongation factor SelB, winged helix. Members of this family adopt a winged-helix fold, with an alpha/beta structure consisting of three alpha-helices and a twisted three-stranded antiparallel beta-sheet, with an alpha-beta-alpha-alpha-beta-beta connectivity. They are involved in both DNA and RNA binding.
Probab=23.37 E-value=45 Score=16.44 Aligned_cols=13 Identities=38% Similarity=0.955 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 6999999999999
Q 537021.9.peg.1 16 FFIIPLLQFLDEI 28 (38)
Q Consensus 16 ffiipllqfldei 28 (38)
=+.||+|.++|..
T Consensus 25 K~ai~lLE~~D~~ 37 (50)
T pfam09107 25 KYAIPLLEYFDRL 37 (50)
T ss_pred HHHHHHHHHHHHC
T ss_conf 8899999988654
No 3
>CHL00038 psbL photosystem II protein L
Probab=17.89 E-value=76 Score=15.34 Aligned_cols=16 Identities=44% Similarity=0.972 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 4899999999711269
Q 537021.9.peg.1 2 MLRMFMLQIIFSKEFF 17 (38)
Q Consensus 2 mlrmfmlqiifskeff 17 (38)
.|-.|.+.+.||.-||
T Consensus 22 LLlifvlavlfSsYfF 37 (38)
T CHL00038 22 LLLIFVLAVLFSNYFF 37 (38)
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 9999999999998703
No 4
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW; InterPro: IPR013360 Proteins in this entry are designated PilF and PilW . This outer membrane protein is required both for pilus stability and for pilus functions such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain..
Probab=16.69 E-value=30 Score=17.30 Aligned_cols=11 Identities=55% Similarity=0.727 Sum_probs=7.1
Q ss_pred HHHHHHHCCCC
Q ss_conf 99533420689
Q 537021.9.peg.1 28 ILDVKNNFGGF 38 (38)
Q Consensus 28 ildvknnfggf 38 (38)
--|+-||||-|
T Consensus 106 ~g~~~NNYG~F 116 (247)
T TIGR02521 106 NGDVLNNYGTF 116 (247)
T ss_pred CCCEECHHHHH
T ss_conf 85232014577
No 5
>pfam09556 RE_HaeIII HaeIII restriction endonuclease. This family includes the HaeIII (recognizes and cleaves GG^CC) restriction endonuclease.
Probab=16.16 E-value=1.1e+02 Score=14.51 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=16.4
Q ss_pred HHHHHHHHH-HHHHHHHHHHHCCC
Q ss_conf 269999999-99999953342068
Q 537021.9.peg.1 15 EFFIIPLLQ-FLDEILDVKNNFGG 37 (38)
Q Consensus 15 effiipllq-fldeildvknnfgg 37 (38)
|-.-+|||| |.+||...-++++|
T Consensus 168 e~vYvPLL~AFi~El~r~~~~~~~ 191 (300)
T pfam09556 168 ERIYVPLLKAFIREIERLNENNKG 191 (300)
T ss_pred CEEHHHHHHHHHHHHHHHHHHCCC
T ss_conf 015199999999999999764778
No 6
>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=13.95 E-value=76 Score=15.36 Aligned_cols=13 Identities=31% Similarity=0.784 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9999999533420
Q 537021.9.peg.1 23 QFLDEILDVKNNF 35 (38)
Q Consensus 23 qfldeildvknnf 35 (38)
+|.+|||+..|.+
T Consensus 1 ~F~~~~L~~HN~~ 13 (144)
T cd05385 1 EFIDECVRIHNEL 13 (144)
T ss_pred CHHHHHHHHHHHH
T ss_conf 9789999999998
No 7
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=13.15 E-value=1.2e+02 Score=14.37 Aligned_cols=15 Identities=53% Similarity=0.941 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 899999999711269
Q 537021.9.peg.1 3 LRMFMLQIIFSKEFF 17 (38)
Q Consensus 3 lrmfmlqiifskeff 17 (38)
|-.|.+.|.||.-||
T Consensus 24 L~ifvl~iLfsSYfF 38 (39)
T PRK00753 24 LLVFVLGILFSSYFF 38 (39)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999998823
No 8
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR; InterPro: IPR010134 This entry identifies the polyhydroxyalkanoate synthesis repressor, PhaR and related proteins. The gene for PhaR regulatory protein is found in general near other genes encoding proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules. The C-terminal region is poorly conserved in this family of proteins..
Probab=11.06 E-value=1.4e+02 Score=14.04 Aligned_cols=27 Identities=44% Similarity=0.519 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHH-HHH-HHH--HHHHHHH
Q ss_conf 89999999971126-999-999--9999999
Q 537021.9.peg.1 3 LRMFMLQIIFSKEF-FII-PLL--QFLDEIL 29 (38)
Q Consensus 3 lrmfmlqiifskef-fii-pll--qfldeil 29 (38)
-|-..||||+..|- -== |+| |||..|.
T Consensus 47 TR~~LLQIIaeeE~r~G~qp~ls~~~L~~iI 77 (109)
T TIGR01848 47 TRSVLLQIIAEEEERGGEQPLLSTDFLTQII 77 (109)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 6889999998865179859846488999998
No 9
>KOG3806 consensus
Probab=10.65 E-value=1.5e+02 Score=13.89 Aligned_cols=17 Identities=47% Similarity=0.573 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999953342
Q 537021.9.peg.1 18 IIPLLQFLDEILDVKNN 34 (38)
Q Consensus 18 iipllqfldeildvknn 34 (38)
.|-|.|||-|.|.-+.|
T Consensus 68 ~iqLwqFLleLl~d~~~ 84 (177)
T KOG3806 68 QIQLWQFLLELLQDESN 84 (177)
T ss_pred HHHHHHHHHHHHHCCCC
T ss_conf 53699999999708324
No 10
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=10.39 E-value=41 Score=16.66 Aligned_cols=11 Identities=64% Similarity=1.096 Sum_probs=0.0
Q ss_pred HHHHHHHCCCC
Q ss_conf 99533420689
Q 537021.9.peg.1 28 ILDVKNNFGGF 38 (38)
Q Consensus 28 ildvknnfggf 38 (38)
|||+.||-||+
T Consensus 237 IlDLR~N~GG~ 247 (406)
T COG0793 237 ILDLRNNPGGL 247 (406)
T ss_pred EEEECCCCCCC
T ss_conf 99967899854
Done!