Query 537021.9.peg.166_1
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Tue May 24 11:54:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_166.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2pjp_A Selenocysteine-specifi 21.5 58 0.0017 15.6 2.1 16 16-31 34-49 (60)
2 >1lva_A Selenocysteine-specifi 21.3 54 0.0016 15.8 1.9 16 16-31 33-48 (60)
3 >2d0t_A Indoleamine 2,3-dioxyg 16.1 57 0.0017 15.7 1.0 15 20-34 9-23 (54)
4 >2j04_A TAU60, YPL007P, hypoth 15.5 4.8 0.00014 20.8 -4.6 10 14-23 40-49 (78)
5 >3bz1_L Photosystem II reactio 14.8 1.1E+02 0.0032 14.3 2.2 16 2-17 21-36 (37)
6 >1ldd_A APC2WHB, anaphase prom 11.4 46 0.0014 16.1 -0.5 30 1-30 30-59 (74)
7 >1d8j_A General transcription 10.9 1E+02 0.003 14.5 1.1 11 25-35 34-44 (81)
8 >3kmi_A Putative membrane prot 10.7 1.3E+02 0.0039 13.9 1.6 19 20-38 159-177 (177)
9 >1v33_A DNA primase small subu 9.6 1.3E+02 0.0037 14.0 1.2 16 2-17 105-120 (124)
10 >1omw_A G-protein coupled rece 5.5 2.7E+02 0.0079 12.4 2.0 12 19-30 3-14 (81)
No 1
>>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli} (A:62-121)
Probab=21.51 E-value=58 Score=15.62 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 6999999999999953
Q 537021.9.peg.1 16 FFIIPLLQFLDEILDV 31 (38)
Q Consensus 16 ffiipllqfldeildv 31 (38)
=+.||+|.++|..-..
T Consensus 34 K~~i~lLEylD~~g~T 49 (60)
T 2pjp_A 34 KLAIQILEYFDRIGFT 49 (60)
T ss_dssp HHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHCCCE
T ss_conf 9999999999754986
No 2
>>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} (A:199-258)
Probab=21.35 E-value=54 Score=15.76 Aligned_cols=16 Identities=31% Similarity=0.771 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 6999999999999953
Q 537021.9.peg.1 16 FFIIPLLQFLDEILDV 31 (38)
Q Consensus 16 ffiipllqfldeildv 31 (38)
=+.||+|.++|..-..
T Consensus 33 K~ai~lLE~~D~~~~T 48 (60)
T 1lva_A 33 KYVLPLLEYLDQVKFT 48 (60)
T ss_dssp HHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHCCCCE
T ss_conf 9999999987206985
No 3
>>2d0t_A Indoleamine 2,3-dioxygenase; helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: HEM PIM NHE; 2.30A {Homo sapiens} (A:263-316)
Probab=16.06 E-value=57 Score=15.66 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999953342
Q 537021.9.peg.1 20 PLLQFLDEILDVKNN 34 (38)
Q Consensus 20 pllqfldeildvknn 34 (38)
.++|++|..|.|+..
T Consensus 9 Sliq~~D~lLgI~h~ 23 (54)
T 2d0t_A 9 SVFQCFDVLLGIQQT 23 (54)
T ss_dssp HHHHHHHHHTTCCSS
T ss_pred CHHHHHHHHHCCCCC
T ss_conf 408999999588456
No 4
>>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetical protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} (A:227-304)
Probab=15.55 E-value=4.8 Score=20.79 Aligned_cols=10 Identities=50% Similarity=0.893 Sum_probs=7.7
Q ss_pred HHHHHHHHHH
Q ss_conf 1269999999
Q 537021.9.peg.1 14 KEFFIIPLLQ 23 (38)
Q Consensus 14 keffiipllq 23 (38)
.|||||||.+
T Consensus 40 ~efyIIpLpd 49 (78)
T 2j04_A 40 ENFHIIPLNH 49 (78)
T ss_dssp SCCCEEEETT
T ss_pred CCCEEEEECC
T ss_conf 6633788325
No 5
>>3bz1_L Photosystem II reaction center protein L; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz2_L* (L:)
Probab=14.85 E-value=1.1e+02 Score=14.34 Aligned_cols=16 Identities=38% Similarity=0.847 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 4899999999711269
Q 537021.9.peg.1 2 MLRMFMLQIIFSKEFF 17 (38)
Q Consensus 2 mlrmfmlqiifskeff 17 (38)
.|-.|.+.+.||.-||
T Consensus 21 lLlifvlavLFssYfF 36 (37)
T 3bz1_L 21 LLLILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 9999999999998703
No 6
>>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} (A:)
Probab=11.42 E-value=46 Score=16.07 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 948999999997112699999999999995
Q 537021.9.peg.1 1 MMLRMFMLQIIFSKEFFIIPLLQFLDEILD 30 (38)
Q Consensus 1 mmlrmfmlqiifskeffiipllqfldeild 30 (38)
+||+||..+-.-.-+.-+--|-.||++..+
T Consensus 30 ~mLkmfv~~~~~~~~~t~~eL~~fL~~~V~ 59 (74)
T 1ldd_A 30 SFLKITVPKDWGYNRITLQQLEGYLNTLAD 59 (74)
T ss_dssp HHHHHHSCGGGCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 999987579999887599999999999997
No 7
>>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} (A:)
Probab=10.89 E-value=1e+02 Score=14.46 Aligned_cols=11 Identities=55% Similarity=0.821 Sum_probs=7.9
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999533420
Q 537021.9.peg.1 25 LDEILDVKNNF 35 (38)
Q Consensus 25 ldeildvknnf 35 (38)
||||||--|..
T Consensus 34 LdEiLDEtn~~ 44 (81)
T 1d8j_A 34 LDEILDETQHL 44 (81)
T ss_dssp HHHHHHHHTCS
T ss_pred HHHHHHHHHHC
T ss_conf 99999888634
No 8
>>3kmi_A Putative membrane protein COG4129; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.96A {Clostridium difficile 630} (A:)
Probab=10.74 E-value=1.3e+02 Score=13.88 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999533420689
Q 537021.9.peg.1 20 PLLQFLDEILDVKNNFGGF 38 (38)
Q Consensus 20 pllqfldeildvknnfggf 38 (38)
-+|+=|.+-|.+|+.|||.
T Consensus 159 q~l~elE~fL~iK~~F~~l 177 (177)
T 3kmi_A 159 LCLTELKQFLVNRKHAQXL 177 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999987409
No 9
>>1v33_A DNA primase small subunit; nucleotidyl transferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; 1.80A {Pyrococcus horikoshii} (A:180-303)
Probab=9.64 E-value=1.3e+02 Score=14.01 Aligned_cols=16 Identities=38% Similarity=0.818 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 4899999999711269
Q 537021.9.peg.1 2 MLRMFMLQIIFSKEFF 17 (38)
Q Consensus 2 mlrmfmlqiifskeff 17 (38)
++|.|-|.--|||.+|
T Consensus 105 L~rLfalSttFSKAYF 120 (124)
T 1v33_A 105 LAKLFALSTRFSKSYF 120 (124)
T ss_dssp HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHCCCCC
T ss_conf 9999999986247777
No 10
>>1omw_A G-protein coupled receptor kinase 2; WD-40 repeat, transferase; 2.50A {Bos taurus} (A:78-158)
Probab=5.48 E-value=2.7e+02 Score=12.43 Aligned_cols=12 Identities=42% Similarity=0.797 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999995
Q 537021.9.peg.1 19 IPLLQFLDEILD 30 (38)
Q Consensus 19 ipllqfldeild 30 (38)
+|.|.|.+||..
T Consensus 3 vpql~FYEeIK~ 14 (81)
T 1omw_A 3 KPLVEFYEEIKK 14 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 179899999988
Done!