Query 537021.9.peg.166_1 Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Tue May 24 15:58:25 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_166.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1lvaa4 a.4.5.35 (A:575-634) C 16.5 33 0.0024 14.9 1.9 15 16-30 33-47 (60) 2 d2axtl1 f.23.31.1 (L:1-37) Pho 14.3 45 0.0033 14.3 2.2 15 3-17 22-36 (37) 3 d1ldda_ a.4.5.34 (A:) Anaphase 11.4 19 0.0014 16.1 -0.5 30 1-30 30-59 (74) 4 d1d8ja_ a.4.5.18 (A:) The cent 10.0 46 0.0034 14.2 1.1 11 25-35 34-44 (81) 5 d2gnoa1 a.80.1.1 (A:209-306) g 7.9 66 0.0048 13.4 1.2 12 22-33 66-77 (98) 6 d2p06a1 a.204.1.3 (A:1-84) Hyp 5.2 1.1E+02 0.0078 12.5 1.0 10 24-33 63-72 (84) 7 d2o35a1 a.293.1.1 (A:2-80) Hyp 4.1 1.1E+02 0.0081 12.4 0.4 20 19-38 17-40 (79) 8 d1smba_ d.111.1.1 (A:) Golgi-a 3.9 1.4E+02 0.011 11.8 1.5 13 23-35 5-17 (149) 9 d1si2a_ b.34.14.1 (A:) Eukaryo 3.5 1.4E+02 0.01 11.9 0.5 13 20-32 4-16 (126) 10 d1puee_ a.4.5.21 (E:) Transcri 3.4 1.4E+02 0.0099 12.0 0.4 16 19-34 2-17 (88) No 1 >d1lvaa4 a.4.5.35 (A:575-634) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]} Probab=16.46 E-value=33 Score=14.91 Aligned_cols=15 Identities=33% Similarity=0.822 Sum_probs=11.5 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 699999999999995 Q 537021.9.peg.1 16 FFIIPLLQFLDEILD 30 (38) Q Consensus 16 ffiipllqfldeild 30 (38) -+.||+|.|+|..-. T Consensus 33 K~ai~lLE~~D~~~~ 47 (60) T d1lvaa4 33 KYVLPLLEYLDQVKF 47 (60) T ss_dssp HHHHHHHHHHHHTTS T ss_pred HHHHHHHHHHHHCCC T ss_conf 899999999864498 No 2 >d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]} Probab=14.27 E-value=45 Score=14.25 Aligned_cols=15 Identities=40% Similarity=0.842 Sum_probs=12.0 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 899999999711269 Q 537021.9.peg.1 3 LRMFMLQIIFSKEFF 17 (38) Q Consensus 3 lrmfmlqiifskeff 17 (38) |-.|.+.+.||.-|| T Consensus 22 Llifvl~vLFssYfF 36 (37) T d2axtl1 22 LLILVLALLFSSYFF 36 (37) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHC T ss_conf 999999999998704 No 3 >d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=11.43 E-value=19 Score=16.08 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=14.5 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 948999999997112699999999999995 Q 537021.9.peg.1 1 MMLRMFMLQIIFSKEFFIIPLLQFLDEILD 30 (38) Q Consensus 1 mmlrmfmlqiifskeffiipllqfldeild 30 (38) +|||||..+---.-+.-.--|-.||++..+ T Consensus 30 ~mLkmfv~~~~~~~~~t~~eL~~FL~~~V~ 59 (74) T d1ldda_ 30 SFLKITVPKDWGYNRITLQQLEGYLNTLAD 59 (74) T ss_dssp HHHHHHSCGGGCCTTCCHHHHHHHHHHHHH T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 999987579999787699999999999986 No 4 >d1d8ja_ a.4.5.18 (A:) The central core domain of TFIIE beta {Human (Homo sapiens) [TaxId: 9606]} Probab=9.97 E-value=46 Score=14.20 Aligned_cols=11 Identities=55% Similarity=0.821 Sum_probs=7.8 Q ss_pred HHHHHHHHHHC Q ss_conf 99999533420 Q 537021.9.peg.1 25 LDEILDVKNNF 35 (38) Q Consensus 25 ldeildvknnf 35 (38) ||||||--|.. T Consensus 34 LeEiLDEt~~~ 44 (81) T d1d8ja_ 34 LDEILDETQHL 44 (81) T ss_dssp HHHHHHHHTCS T ss_pred HHHHHHHHHHC T ss_conf 99999888634 No 5 >d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima [TaxId: 2336]} Probab=7.93 E-value=66 Score=13.45 Aligned_cols=12 Identities=58% Similarity=0.816 Sum_probs=8.9 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999995334 Q 537021.9.peg.1 22 LQFLDEILDVKN 33 (38) Q Consensus 22 lqfldeildvkn 33 (38) ..|||.||.||. T Consensus 66 vsfldsilrvk~ 77 (98) T d2gnoa1 66 VSFLDSILRVKI 77 (98) T ss_dssp HHHHHHHHTCCG T ss_pred HHHHHHHHHHHH T ss_conf 389998899986 No 6 >d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]} Probab=5.17 E-value=1.1e+02 Score=12.45 Aligned_cols=10 Identities=60% Similarity=0.880 Sum_probs=6.4 Q ss_pred HHHHHHHHHH Q ss_conf 9999995334 Q 537021.9.peg.1 24 FLDEILDVKN 33 (38) Q Consensus 24 fldeildvkn 33 (38) .-||.|||.| T Consensus 63 lrdelldvan 72 (84) T d2p06a1 63 LRDELLDVAN 72 (84) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999999 No 7 >d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]} Probab=4.06 E-value=1.1e+02 Score=12.37 Aligned_cols=20 Identities=50% Similarity=0.707 Sum_probs=13.8 Q ss_pred HHHHHHHHHHHHHHH----HCCCC Q ss_conf 999999999995334----20689 Q 537021.9.peg.1 19 IPLLQFLDEILDVKN----NFGGF 38 (38) Q Consensus 19 ipllqfldeildvkn----nfggf 38 (38) -.|++.|++--||.| |..|| T Consensus 17 rrL~~HL~~r~dVQNIDLMnLaGF 40 (79) T d2o35a1 17 RRLLEHLRERSDVQNIDLMNLAGF 40 (79) T ss_dssp HHHHHHHHHTTTSCHHHHHHHHSC T ss_pred HHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 999999873764203699999999 No 8 >d1smba_ d.111.1.1 (A:) Golgi-associated PR-1 protein {Human (Homo sapiens) [TaxId: 9606]} Probab=3.89 E-value=1.4e+02 Score=11.82 Aligned_cols=13 Identities=38% Similarity=0.813 Sum_probs=9.0 Q ss_pred HHHHHHHHHHHHC Q ss_conf 9999999533420 Q 537021.9.peg.1 23 QFLDEILDVKNNF 35 (38) Q Consensus 23 qfldeildvknnf 35 (38) ||-++|||..|.+ T Consensus 5 ~f~~~il~~HN~~ 17 (149) T d1smba_ 5 QFHNEVLKAHNEY 17 (149) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999999 No 9 >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Probab=3.49 E-value=1.4e+02 Score=11.91 Aligned_cols=13 Identities=38% Similarity=1.068 Sum_probs=8.7 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999533 Q 537021.9.peg.1 20 PLLQFLDEILDVK 32 (38) Q Consensus 20 pllqfldeildvk 32 (38) |++.|+-|+++.. T Consensus 4 pvidf~~~~~~~~ 16 (126) T d1si2a_ 4 PVIEFMCEVLDIR 16 (126) T ss_dssp EHHHHHHHHHTCS T ss_pred CHHHHHHHHHCCC T ss_conf 6899999985513 No 10 >d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]} Probab=3.36 E-value=1.4e+02 Score=11.95 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999953342 Q 537021.9.peg.1 19 IPLLQFLDEILDVKNN 34 (38) Q Consensus 19 ipllqfldeildvknn 34 (38) |-|.|||-+.|+-..+ T Consensus 2 i~LwqFL~~LL~d~~~ 17 (88) T d1puee_ 2 IRLYQFLLDLLRSGDM 17 (88) T ss_dssp CCHHHHHHHHHHHTCC T ss_pred CCHHHHHHHHHCCCCC T ss_conf 3599999999759457 Done!