Query 537021.9.peg.186_1
Match_columns 45
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 24 23:03:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_186.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bua_E HSNM1B, DNA cross-LINK 5.6 1.4E+02 0.0058 13.6 0.6 17 17-33 2-18 (36)
2 1zfd_A SWI5; DNA binding motif 4.7 50 0.0021 15.8 -2.1 21 2-22 1-22 (32)
3 3do9_A UPF0302 protein BA_1542 4.6 1.6E+02 0.0067 13.3 0.4 20 14-33 7-26 (188)
4 3kwr_A Putative RNA-binding pr 3.9 2.5E+02 0.011 12.3 0.9 10 35-44 72-81 (97)
5 3b71_D T-cell surface glycopro 3.7 2.5E+02 0.011 12.3 0.8 11 14-24 4-14 (26)
6 3c5t_B Exendin-4, exenatide; l 3.6 2.9E+02 0.012 12.0 1.6 21 12-32 4-24 (31)
7 3p0c_A Nischarin; structural g 3.5 3E+02 0.012 11.9 1.2 13 20-34 118-130 (130)
8 1va1_A Transcription factor SP 3.4 88 0.0037 14.6 -1.8 21 2-22 6-27 (37)
9 1p7a_A BF3, BKLF, kruppel-like 2.8 1.4E+02 0.0059 13.6 -1.3 20 2-22 9-28 (37)
10 1q68_A T-cell surface glycopro 2.8 3.5E+02 0.015 11.6 0.9 12 14-25 11-22 (38)
No 1
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=5.58 E-value=1.4e+02 Score=13.60 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=12.9
Q ss_pred HHHHHHHHHHCCCCCCC
Q ss_conf 33655786333800201
Q 537021.9.peg.1 17 QSKRLFLEFFLNPVDIN 33 (45)
Q Consensus 17 qskrlflefflnpvdin 33 (45)
....|-|++.|.||++-
T Consensus 2 efrgLALkYLLTPv~f~ 18 (36)
T 3bua_E 2 EFRGLALKYLLTPVNFF 18 (36)
T ss_pred CHHHHHHHHHHCHHHHH
T ss_conf 50337599880428898
No 2
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=4.71 E-value=50 Score=15.77 Aligned_cols=21 Identities=29% Similarity=0.675 Sum_probs=13.6
Q ss_pred CCCEEEHH-HHHHHHHHHHHHH
Q ss_conf 86546275-8899860336557
Q 537021.9.peg.1 2 EAPYYVTF-CCKKVFSQSKRLF 22 (45)
Q Consensus 2 eapyyvtf-cckkvfsqskrlf 22 (45)
|-||--++ -|.|.|+++..|-
T Consensus 1 EkPf~C~~~gC~k~F~~~~~L~ 22 (32)
T 1zfd_A 1 DRPYSCDHPGCDKAFVRNHDLI 22 (32)
T ss_dssp CCSBCCCCTTCCCCBSSSHHHH
T ss_pred CCCEECCCCCCCCEECCHHHHH
T ss_conf 9385797899897738774889
No 3
>3do9_A UPF0302 protein BA_1542/GBAA1542/BAS1430; uncharacterized protein, structural genomics, protein structure initiative, PSI; 2.75A {Bacillus anthracis}
Probab=4.62 E-value=1.6e+02 Score=13.26 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHCCCCCCC
Q ss_conf 86033655786333800201
Q 537021.9.peg.1 14 VFSQSKRLFLEFFLNPVDIN 33 (45)
Q Consensus 14 vfsqskrlflefflnpvdin 33 (45)
|-.+.|+-|+++||+-....
T Consensus 7 vsv~~Kk~Fi~wfL~~y~lK 26 (188)
T 3do9_A 7 VSVNEKKDFVKWFLNNYQLK 26 (188)
T ss_dssp CCHHHHHHHHHHHHHHCCBS
T ss_pred CCHHHHHHHHHHHHHHCCCC
T ss_conf 56899999999999834544
No 4
>3kwr_A Putative RNA-binding protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: GOL; 1.45A {Lactobacillus plantarum}
Probab=3.87 E-value=2.5e+02 Score=12.26 Aligned_cols=10 Identities=50% Similarity=0.920 Sum_probs=7.3
Q ss_pred CEEEEEEEEC
Q ss_conf 2012301224
Q 537021.9.peg.1 35 MRSFVFWITN 44 (45)
Q Consensus 35 mrsfvfwitn 44 (45)
-..||.|||-
T Consensus 72 stefvvwitm 81 (97)
T 3kwr_A 72 STEFVVWITM 81 (97)
T ss_dssp TTEEEEEEEC
T ss_pred CCEEEEEEEE
T ss_conf 3307999996
No 5
>3b71_D T-cell surface glycoprotein CD4; four-helix bundle, protein-protein complex, acetylation, alternative splicing, ATP-binding, cell junction, kinase; 2.82A {Homo sapiens}
Probab=3.70 E-value=2.5e+02 Score=12.28 Aligned_cols=11 Identities=55% Similarity=0.549 Sum_probs=8.3
Q ss_pred HHHHHHHHHHH
Q ss_conf 86033655786
Q 537021.9.peg.1 14 VFSQSKRLFLE 24 (45)
Q Consensus 14 vfsqskrlfle 24 (45)
-.||-|||.-|
T Consensus 4 rmsqikrllse 14 (26)
T 3b71_D 4 RMSQIKRLLSE 14 (26)
T ss_pred HHHHHHHHHHH
T ss_conf 89999999810
No 6
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain, G-protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=3.61 E-value=2.9e+02 Score=12.01 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCC
Q ss_conf 998603365578633380020
Q 537021.9.peg.1 12 KKVFSQSKRLFLEFFLNPVDI 32 (45)
Q Consensus 12 kkvfsqskrlflefflnpvdi 32 (45)
|..-...-|||+|+.-|--.-
T Consensus 4 kqmeeeavrlfiewlknggps 24 (31)
T 3c5t_B 4 KQMEEEAVRLFIEWLKNGGPS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHHHCCCCC
T ss_conf 899999999999999818988
No 7
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}
Probab=3.46 E-value=3e+02 Score=11.93 Aligned_cols=13 Identities=38% Similarity=0.623 Sum_probs=7.0
Q ss_pred HHHHHHHCCCCCCCC
Q ss_conf 557863338002011
Q 537021.9.peg.1 20 RLFLEFFLNPVDING 34 (45)
Q Consensus 20 rlflefflnpvding 34 (45)
+-||| ++..||||
T Consensus 118 ~~FLe--~~~~~~~~ 130 (130)
T 3p0c_A 118 AHFLH--FHFYEING 130 (130)
T ss_dssp HHHHH--SCTTC---
T ss_pred HHHHC--CCCCCCCC
T ss_conf 99858--87556687
No 8
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=3.36 E-value=88 Score=14.56 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=13.3
Q ss_pred CCCEEEHH-HHHHHHHHHHHHH
Q ss_conf 86546275-8899860336557
Q 537021.9.peg.1 2 EAPYYVTF-CCKKVFSQSKRLF 22 (45)
Q Consensus 2 eapyyvtf-cckkvfsqskrlf 22 (45)
+-||--++ -|.|.|+++..|-
T Consensus 6 ~k~y~C~~~~C~k~F~~~~~L~ 27 (37)
T 1va1_A 6 KKQHICHIQGCGKVYGKTSHLR 27 (37)
T ss_dssp CCCEECCSTTCCCEESCHHHHH
T ss_pred CCCCCCCCCCCCCEECCHHHHH
T ss_conf 8887991989899759657867
No 9
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=2.81 E-value=1.4e+02 Score=13.55 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=13.4
Q ss_pred CCCEEEHHHHHHHHHHHHHHH
Q ss_conf 865462758899860336557
Q 537021.9.peg.1 2 EAPYYVTFCCKKVFSQSKRLF 22 (45)
Q Consensus 2 eapyyvtfcckkvfsqskrlf 22 (45)
|-||--.. |.|.|+++..|-
T Consensus 9 ekPy~C~~-Cgk~F~~~~~L~ 28 (37)
T 1p7a_A 9 IKPFQCPD-CDRSFSRSDHLA 28 (37)
T ss_dssp SSSBCCTT-TCCCBSSHHHHH
T ss_pred CCCEECCC-CCCEECCHHHHH
T ss_conf 88947899-999917788889
No 10
>1q68_A T-cell surface glycoprotein CD4; peptide-peptide complex, helix-helix interaction, zinc coordination, beta hairpin; NMR {Homo sapiens} SCOP: j.48.1.1
Probab=2.80 E-value=3.5e+02 Score=11.56 Aligned_cols=12 Identities=50% Similarity=0.423 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHH
Q ss_conf 860336557863
Q 537021.9.peg.1 14 VFSQSKRLFLEF 25 (45)
Q Consensus 14 vfsqskrlflef 25 (45)
-.||-|||.-|-
T Consensus 11 rmsqikrllsek 22 (38)
T 1q68_A 11 RLSQIKRLLSEK 22 (38)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHC
T ss_conf 999999998222
Done!