RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= 537021.9.peg.186_1
         (45 letters)



>gnl|CDD|132002 TIGR02957, SigX4, RNA polymerase sigma-70 factor, TIGR02957 family.
            This group of sigma factors are members of the sigma-70
           family (TIGR02937). They and appear by homology, tree
           building and bidirectional best hits, to represent a
           conserved family. This family is found in a limited
           number of bacterial lineages. This family includes
           apparent paralogous expansion in Streptomyces coelicolor
           A3(2), and multiple copies in Mycobacterium smegmatis
           MC2, Streptomyces avermitilis MA-4680 and Nocardia
           farcinica IFM10152.
          Length = 281

 Score = 25.4 bits (56), Expect = 3.9
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 19  KRLFLEFFLNPVDINGMRSFVFWITN 44
           +RL     ++PVD+NG  + +  I  
Sbjct: 225 RRLGPGGRVDPVDVNGQPAVLVRIDG 250


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.335    0.144    0.484 

Gapped
Lambda     K      H
   0.267   0.0708    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 719,579
Number of extensions: 26261
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 3
Length of query: 45
Length of database: 5,994,473
Length adjustment: 18
Effective length of query: 27
Effective length of database: 5,605,529
Effective search space: 151349283
Effective search space used: 151349283
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.1 bits)