Query 537021.9.peg.191_1 Match_columns 44 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Tue May 24 18:23:27 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_191.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1e5r_A Proline oxidase; oxido 13.4 66 0.0019 15.6 0.7 21 11-31 21-41 (97) 2 >3e7j_A Heparinase II protein; 10.6 1.2E+02 0.0036 14.3 1.4 14 26-39 13-26 (92) 3 >3dwl_E Actin-related protein 6.6 2.3E+02 0.0068 12.9 2.4 37 2-38 43-81 (174) 4 >1v54_A Cytochrome C oxidase p 5.3 2.7E+02 0.008 12.5 1.2 15 19-33 7-26 (89) 5 >1k8k_E P21, ARP2/3 complex 21 5.1 2.9E+02 0.0085 12.4 1.7 37 2-38 41-79 (178) 6 >3f2b_A DNA-directed DNA polym 4.6 2.6E+02 0.0076 12.7 0.6 19 12-30 9-29 (80) 7 >3kj0_B BCL-2-like protein 11; 4.5 2.8E+02 0.0084 12.4 0.8 10 29-38 6-15 (27) 8 >1nvm_A HOA, 4-hydroxy-2-oxova 4.2 3.4E+02 0.01 12.1 2.8 34 5-38 17-50 (72) 9 >1pyo_B Caspase-2; apoptosis, 3.6 3.4E+02 0.01 12.0 0.6 6 32-37 38-43 (105) 10 >1nj1_A Proline-tRNA synthetas 3.6 3.9E+02 0.011 11.8 1.1 9 29-37 40-48 (87) No 1 >>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} (A:194-290) Probab=13.38 E-value=66 Score=15.55 Aligned_cols=21 Identities=43% Similarity=0.716 Sum_probs=17.5 Q ss_pred HHHHHHHHHHEEEHHHHHHHH Q ss_conf 999533766423157778888 Q 537021.9.peg.1 11 KLLSFGFVLLSINCRDIIFSI 31 (44) Q Consensus 11 kllsfgfvllsincrdiifsi 31 (44) .+++++-|.--.|-|||.|-. T Consensus 21 ~IlalS~visr~NfRdIvf~L 41 (97) T 1e5r_A 21 RILSLGQVIERENFRDILFLL 41 (97) T ss_dssp HHHGGGGTCCTTTHHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHH T ss_conf 998651201233177899998 No 2 >>3e7j_A Heparinase II protein; alpha and beta lyase, alpha6/alpha6 incomplete toroid, sugar binding protein, lyase; HET: NAG GCU GCD; 2.10A {Pedobacter heparinum} PDB: 3e80_A* 2fut_A* 2fuq_A* (A:229-320) Probab=10.63 E-value=1.2e+02 Score=14.26 Aligned_cols=14 Identities=29% Similarity=0.959 Sum_probs=11.7 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 77888886962010 Q 537021.9.peg.1 26 DIIFSIWYIQEVGA 39 (44) Q Consensus 26 diifsiwyiqevga 39 (44) .-.|+.|-.|..|| T Consensus 13 nDLF~LWIL~rMGA 26 (92) T 3e7j_A 13 NDLFALWILDRMGA 26 (92) T ss_dssp HHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHCCC T ss_conf 99999999986618 No 3 >>3dwl_E Actin-related protein 2/3 complex subunit 3; propellor, actin-binding, ATP-binding, cytoplasm, cytoskeleton, nucleotide-binding; HET: ATP; 3.78A {Schizosaccharomyces pombe} (E:) Probab=6.65 E-value=2.3e+02 Score=12.88 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=22.7 Q ss_pred CCCHHHHHHHHHHH--HHHHHEEEHHHHHHHHHHHHHHH Q ss_conf 21011479999953--37664231577788888696201 Q 537021.9.peg.1 2 IVREFSPFLKLLSF--GFVLLSINCRDIIFSIWYIQEVG 38 (44) Q Consensus 2 ivrefspflkllsf--gfvllsincrdiifsiwyiqevg 38 (44) ||-|---|.|.-+| .|-.-+-.-|-+|+-+|||.|.= T Consensus 43 IIDEaL~~FraN~FFrnfeik~~aDR~LIYltlyi~eCL 81 (174) T 3dwl_E 43 IIDECIGLFRANCFFRNFEIKGPADRTLIYGTLFISECL 81 (174) T ss_dssp -CHHHHHHHHHHTTCCCC-----CTHHHHHHHHHHHSCC T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHH T ss_conf 799999998764665236458862045523699999999 No 4 >>1v54_A Cytochrome C oxidase polypeptide I; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} (A:1-89) Probab=5.32 E-value=2.7e+02 Score=12.53 Aligned_cols=15 Identities=47% Similarity=0.953 Sum_probs=10.3 Q ss_pred HHEEEHHHH-----HHHHHH Q ss_conf 642315777-----888886 Q 537021.9.peg.1 19 LLSINCRDI-----IFSIWY 33 (44) Q Consensus 19 llsincrdi-----ifsiwy 33 (44) +.|-|-+|| ||.+|- T Consensus 7 l~STNHKdIGtLY~ifg~ws 26 (89) T 1v54_A 7 LFSTNHKDIGTLYLLFGAWA 26 (89) T ss_dssp TSCCCHHHHHHHHHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHHHH T ss_conf 10277899999999999999 No 5 >>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} (E:) Probab=5.11 E-value=2.9e+02 Score=12.39 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=20.6 Q ss_pred CCCHHHHHHHHHHH--HHHHHEEEHHHHHHHHHHHHHHH Q ss_conf 21011479999953--37664231577788888696201 Q 537021.9.peg.1 2 IVREFSPFLKLLSF--GFVLLSINCRDIIFSIWYIQEVG 38 (44) Q Consensus 2 ivrefspflkllsf--gfvllsincrdiifsiwyiqevg 38 (44) ||.|---|.|.-+| .|-.-|-.-|-+|+-+|||.|.= T Consensus 41 IIDEaL~~FraN~FFrnfeIK~~aDR~LIYltlyi~eCL 79 (178) T 1k8k_E 41 IVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECL 79 (178) T ss_dssp HHHHHHHHHHHHTTCSCCCCCSHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHH T ss_conf 799999998764665136457863145523699999999 No 6 >>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* (A:776-855) Probab=4.55 E-value=2.6e+02 Score=12.65 Aligned_cols=19 Identities=42% Similarity=0.634 Sum_probs=11.3 Q ss_pred HHHHHHHHH--EEEHHHHHHH Q ss_conf 995337664--2315777888 Q 537021.9.peg.1 12 LLSFGFVLL--SINCRDIIFS 30 (44) Q Consensus 12 llsfgfvll--sincrdiifs 30 (44) |..-|..-| .|.|||-|.. T Consensus 9 lI~~g~~tl~evI~cRDDIM~ 29 (80) T 3f2b_A 9 LIQNGTCTLSEVIGCRDDIMV 29 (80) T ss_dssp HHHTTSSCGGGSCCSHHHHHH T ss_pred CCCCCCCCHHHHHCCHHHHHH T ss_conf 023687668987300748999 No 7 >>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B (B:) Probab=4.49 E-value=2.8e+02 Score=12.43 Aligned_cols=10 Identities=50% Similarity=0.956 Sum_probs=7.0 Q ss_pred HHHHHHHHHH Q ss_conf 8888696201 Q 537021.9.peg.1 29 FSIWYIQEVG 38 (44) Q Consensus 29 fsiwyiqevg 38 (44) -.||+-||.- T Consensus 6 peiwiaqelr 15 (27) T 3kj0_B 6 PEIWYAQELR 15 (27) T ss_dssp HHHHHHHHHH T ss_pred CCCHHHHHHH T ss_conf 4027999999 No 8 >>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling, bifunctional enzyme; HET: NAD; 1.70A {Pseudomonas SP} (A:274-345) Probab=4.23 E-value=3.4e+02 Score=12.06 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=19.7 Q ss_pred HHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHH Q ss_conf 1147999995337664231577788888696201 Q 537021.9.peg.1 5 EFSPFLKLLSFGFVLLSINCRDIIFSIWYIQEVG 38 (44) Q Consensus 5 efspflkllsfgfvllsincrdiifsiwyiqevg 38 (44) -||.||+--.-----..++-|||.+..=--+-|| T Consensus 17 VySsFl~ha~raa~~yGVd~rdIl~elGrR~~Vg 50 (72) T 1nvm_A 17 VYSSFLRHAEIAAAKYNLKTLDILVELGHRRMVG 50 (72) T ss_dssp CCTTHHHHHHHHHHHHTCCHHHHHHHHHHHTCCT T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCC T ss_conf 4730554899999874998799998608821117 No 9 >>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase; 1.65A {Homo sapiens} (B:) Probab=3.65 E-value=3.4e+02 Score=12.03 Aligned_cols=6 Identities=50% Similarity=1.636 Sum_probs=0.0 Q ss_pred HHHHHH Q ss_conf 869620 Q 537021.9.peg.1 32 WYIQEV 37 (44) Q Consensus 32 wyiqev 37 (44) ||||+. T Consensus 38 wfIq~L 43 (105) T 1pyo_B 38 WYIEAL 43 (105) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 899999 No 10 >>1nj1_A Proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase; HET: 5CA; 2.55A {Methanothermobacterthermautotrophicus} (A:1-87) Probab=3.61 E-value=3.9e+02 Score=11.77 Aligned_cols=9 Identities=33% Similarity=0.866 Sum_probs=0.0 Q ss_pred HHHHHHHHH Q ss_conf 888869620 Q 537021.9.peg.1 29 FSIWYIQEV 37 (44) Q Consensus 29 fsiwyiqev 37 (44) ||-||.|-+ T Consensus 40 Fs~WY~eVi 48 (87) T 1nj1_A 40 FSEWFHNIL 48 (87) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 379999999 Done!