Query         537021.9.peg.204_1
Match_columns 53
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 39220
Date          Wed May 25 16:12:12 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_204.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG1774 consensus               14.0      41   0.001   16.4  -0.5   37   11-47      4-40  (88)
  2 KOG3389 consensus               13.7      70  0.0018   15.2   0.6   17   20-36     76-92  (178)
  3 pfam11363 DUF3164 Protein of u  11.2 1.5E+02  0.0039   13.5   2.0   32   14-48    164-195 (195)
  4 KOG4102 consensus               10.9 1.3E+02  0.0034   13.8   1.4   27    3-34     51-77  (121)
  5 KOG0826 consensus                9.5      42  0.0011   16.3  -1.6   37   12-48    309-352 (357)
  6 pfam08863 YolD YolD-like prote   6.8 1.5E+02  0.0037   13.6   0.2   34    6-39     28-61  (92)
  7 pfam08902 DUF1848 Domain of un   6.8 1.6E+02  0.0041   13.4   0.4   22    5-29    135-156 (264)
  8 TIGR02609 doc_partner putative   6.6 2.1E+02  0.0053   12.8   0.8   24   11-34      4-29  (77)
  9 KOG4510 consensus                6.2 1.5E+02  0.0038   13.6  -0.1   19    3-21    113-131 (346)
 10 pfam10572 UPF0556 Uncharacteri   5.9 2.7E+02  0.0068   12.3   1.1   13   20-32     45-57  (158)

No 1  
>KOG1774 consensus
Probab=13.98  E-value=41  Score=16.37  Aligned_cols=37  Identities=22%  Similarity=0.466  Sum_probs=29.4

Q ss_pred             CCCCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEEHH
Q ss_conf             1124616886232322211587640588877522467
Q 537021.9.peg.2   11 RKLSNSVVLTKTCIFSYARNNTDSKIYHYRTISLHLS   47 (53)
Q Consensus        11 rklsnsvvltktcifsyarnntdskiyhyrtislhls   47 (53)
                      +|.....|..-.|||.|-.|.++-.|+-|..+++.+.
T Consensus         4 ~kv~kvmv~Pin~Ifr~Lq~~t~VqIWl~eq~~~rie   40 (88)
T KOG1774           4 EKVQKVMVQPINLIFRFLQNRTRVQIWLFEQVGLRIE   40 (88)
T ss_pred             CCCCCEECCCHHHHHHHHHCCCCEEEEEEECCCCEEE
T ss_conf             2216145276999999986278638998713683776


No 2  
>KOG3389 consensus
Probab=13.72  E-value=70  Score=15.19  Aligned_cols=17  Identities=47%  Similarity=0.411  Sum_probs=13.6

Q ss_pred             EEEEEEEEECCCCCCEE
Q ss_conf             62323222115876405
Q 537021.9.peg.2   20 TKTCIFSYARNNTDSKI   36 (53)
Q Consensus        20 tktcifsyarnntdski   36 (53)
                      .|.-||+-||++|.|..
T Consensus        76 RkvrIf~PAR~~tQSg~   92 (178)
T KOG3389          76 RKVRIFSPARTATQSGS   92 (178)
T ss_pred             EEEEEECCHHHHHHCCC
T ss_conf             05899634044311135


No 3  
>pfam11363 DUF3164 Protein of unknown function (DUF3164). This family of proteins has no known function.
Probab=11.21  E-value=1.5e+02  Score=13.49  Aligned_cols=32  Identities=47%  Similarity=0.541  Sum_probs=23.6

Q ss_pred             CCCEEEEEEEEEEEECCCCCCEEEEEEEEEEEHHH
Q ss_conf             46168862323222115876405888775224677
Q 537021.9.peg.2   14 SNSVVLTKTCIFSYARNNTDSKIYHYRTISLHLSK   48 (53)
Q Consensus        14 snsvvltktcifsyarnntdskiyhyrtislhlsk   48 (53)
                      |--|+-+|+-|--|-|.+.+.+   |+.|+|.++|
T Consensus       164 aiqv~gSk~YiR~YeR~~~~g~---~~~I~LDlAk  195 (195)
T pfam11363       164 SIQVVGSKSYIRFYERVGDDGK---YEPISLDLAK  195 (195)
T ss_pred             HHEECCCHHEEEEEEECCCCCC---EEEEEECCCC
T ss_conf             8711121214899997289887---7874422569


No 4  
>KOG4102 consensus
Probab=10.87  E-value=1.3e+02  Score=13.78  Aligned_cols=27  Identities=33%  Similarity=0.459  Sum_probs=18.7

Q ss_pred             EEEEEHHCCCCCCCEEEEEEEEEEEECCCCCC
Q ss_conf             00000320112461688623232221158764
Q 537021.9.peg.2    3 LMYFELMNRKLSNSVVLTKTCIFSYARNNTDS   34 (53)
Q Consensus         3 lmyfelmnrklsnsvvltktcifsyarnntds   34 (53)
                      ..--|-||||-|+-     -|||--.|+--||
T Consensus        51 vVDNEhMgrkKSKc-----CCIy~kpr~~~es   77 (121)
T KOG4102          51 VVDNEHMGRKKSKC-----CCIYHKPRAFDES   77 (121)
T ss_pred             CCCCCCCCCCCCCE-----EEEEECCCCCCCC
T ss_conf             32330026554525-----6887375344765


No 5  
>KOG0826 consensus
Probab=9.55  E-value=42  Score=16.29  Aligned_cols=37  Identities=35%  Similarity=0.486  Sum_probs=24.4

Q ss_pred             CCCCCEEEE-------EEEEEEEECCCCCCEEEEEEEEEEEHHH
Q ss_conf             124616886-------2323222115876405888775224677
Q 537021.9.peg.2   12 KLSNSVVLT-------KTCIFSYARNNTDSKIYHYRTISLHLSK   48 (53)
Q Consensus        12 klsnsvvlt-------ktcifsyarnntdskiyhyrtislhlsk   48 (53)
                      |..|..|++       -+|||+|.+|....-+-+|.+---|+-|
T Consensus       309 ~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~r  352 (357)
T KOG0826         309 KRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIR  352 (357)
T ss_pred             CCCCCCEEEECCEEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf             04788468862568869999999976587886687630999998


No 6  
>pfam08863 YolD YolD-like protein. Members of this family are functionally uncharacterized. However it has been predicted that thes proteins are functionally equivalent to the UmuD subunit of polymerase V from gram-negative bacteria.
Probab=6.80  E-value=1.5e+02  Score=13.58  Aligned_cols=34  Identities=18%  Similarity=0.254  Sum_probs=25.3

Q ss_pred             EEHHCCCCCCCEEEEEEEEEEEECCCCCCEEEEE
Q ss_conf             0032011246168862323222115876405888
Q 537021.9.peg.2    6 FELMNRKLSNSVVLTKTCIFSYARNNTDSKIYHY   39 (53)
Q Consensus         6 felmnrklsnsvvltktcifsyarnntdskiyhy   39 (53)
                      +|.+|++|+-+.--...+.++|-+++--..++-+
T Consensus        28 le~i~~~l~~a~~~~~~v~itY~~dg~~~~~~g~   61 (92)
T pfam08863        28 LEEINELLSQALESEQEILITYYEDGYIETYYGT   61 (92)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEE
T ss_conf             9999999999974898699999969989999999


No 7  
>pfam08902 DUF1848 Domain of unknown function (DUF1848). This family of proteins are functionally uncharacterized. The C-terminus contains a cluster of cysteines that are similar to the iron-sulfur cluster found at the N-terminus of pfam04055.
Probab=6.80  E-value=1.6e+02  Score=13.37  Aligned_cols=22  Identities=32%  Similarity=0.588  Sum_probs=16.6

Q ss_pred             EEEHHCCCCCCCEEEEEEEEEEEEC
Q ss_conf             0003201124616886232322211
Q 537021.9.peg.2    5 YFELMNRKLSNSVVLTKTCIFSYAR   29 (53)
Q Consensus         5 yfelmnrklsnsvvltktcifsyar   29 (53)
                      .||-|-.+|+.   .|+.|++|++.
T Consensus       135 ~F~~ia~~L~g---yt~~~viSF~D  156 (264)
T pfam08902       135 SFERLAAALSG---YTDRCVISFLD  156 (264)
T ss_pred             HHHHHHHHHHC---CCCEEEEEEEC
T ss_conf             99999998618---26789997113


No 8  
>TIGR02609 doc_partner putative addiction module antidote; InterPro: IPR013432    This entry contains putative addiction module antidote proteins encoded by genes that appear recurrently in two-gene operons where the other gene encodes a Doc (death-on-curing) protein IPR006440 from INTERPRO. Note that these proteins tend to be found on bacterial chromosomes, not on plasmids..
Probab=6.58  E-value=2.1e+02  Score=12.84  Aligned_cols=24  Identities=38%  Similarity=0.486  Sum_probs=12.2

Q ss_pred             CCCCCCEEEE--EEEEEEEECCCCCC
Q ss_conf             1124616886--23232221158764
Q 537021.9.peg.2   11 RKLSNSVVLT--KTCIFSYARNNTDS   34 (53)
Q Consensus        11 rklsnsvvlt--ktcifsyarnntds   34 (53)
                      ||..||.|.|  |-.+-+---+..|.
T Consensus         4 rkvGNS~vv~lpKE~l~~L~~~~GDt   29 (77)
T TIGR02609         4 RKVGNSLVVTLPKEVLESLGLKEGDT   29 (77)
T ss_pred             EEEECCEEEEECHHHHHHCCCCCCCE
T ss_conf             55505122674748897468999982


No 9  
>KOG4510 consensus
Probab=6.16  E-value=1.5e+02  Score=13.57  Aligned_cols=19  Identities=47%  Similarity=0.767  Sum_probs=15.9

Q ss_pred             EEEEEHHCCCCCCCEEEEE
Q ss_conf             0000032011246168862
Q 537021.9.peg.2    3 LMYFELMNRKLSNSVVLTK   21 (53)
Q Consensus         3 lmyfelmnrklsnsvvltk   21 (53)
                      +|||.+|.-.++..+|.|-
T Consensus       113 lmyya~~~mslaDA~vItF  131 (346)
T KOG4510         113 LMYYALMYMSLADAVVITF  131 (346)
T ss_pred             HHHHHHHHCCHHHEEEEEE
T ss_conf             9999996204410379985


No 10 
>pfam10572 UPF0556 Uncharacterized protein family UPF0556. This family of proteins has no known function.
Probab=5.89  E-value=2.7e+02  Score=12.27  Aligned_cols=13  Identities=31%  Similarity=0.692  Sum_probs=8.8

Q ss_pred             EEEEEEEEECCCC
Q ss_conf             6232322211587
Q 537021.9.peg.2   20 TKTCIFSYARNNT   32 (53)
Q Consensus        20 tktcifsyarnnt   32 (53)
                      .-+|+|.||-..-
T Consensus        45 ~y~CtFtyaaqGG   57 (158)
T pfam10572        45 DYKCTFTYAAQGG   57 (158)
T ss_pred             CEEEEEEEEEECC
T ss_conf             5479999995067


Done!