Query 537021.9.peg.204_1 Match_columns 53 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 39220 Date Wed May 25 16:12:12 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_204.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 KOG1774 consensus 14.0 41 0.001 16.4 -0.5 37 11-47 4-40 (88) 2 KOG3389 consensus 13.7 70 0.0018 15.2 0.6 17 20-36 76-92 (178) 3 pfam11363 DUF3164 Protein of u 11.2 1.5E+02 0.0039 13.5 2.0 32 14-48 164-195 (195) 4 KOG4102 consensus 10.9 1.3E+02 0.0034 13.8 1.4 27 3-34 51-77 (121) 5 KOG0826 consensus 9.5 42 0.0011 16.3 -1.6 37 12-48 309-352 (357) 6 pfam08863 YolD YolD-like prote 6.8 1.5E+02 0.0037 13.6 0.2 34 6-39 28-61 (92) 7 pfam08902 DUF1848 Domain of un 6.8 1.6E+02 0.0041 13.4 0.4 22 5-29 135-156 (264) 8 TIGR02609 doc_partner putative 6.6 2.1E+02 0.0053 12.8 0.8 24 11-34 4-29 (77) 9 KOG4510 consensus 6.2 1.5E+02 0.0038 13.6 -0.1 19 3-21 113-131 (346) 10 pfam10572 UPF0556 Uncharacteri 5.9 2.7E+02 0.0068 12.3 1.1 13 20-32 45-57 (158) No 1 >KOG1774 consensus Probab=13.98 E-value=41 Score=16.37 Aligned_cols=37 Identities=22% Similarity=0.466 Sum_probs=29.4 Q ss_pred CCCCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEEHH Q ss_conf 1124616886232322211587640588877522467 Q 537021.9.peg.2 11 RKLSNSVVLTKTCIFSYARNNTDSKIYHYRTISLHLS 47 (53) Q Consensus 11 rklsnsvvltktcifsyarnntdskiyhyrtislhls 47 (53) +|.....|..-.|||.|-.|.++-.|+-|..+++.+. T Consensus 4 ~kv~kvmv~Pin~Ifr~Lq~~t~VqIWl~eq~~~rie 40 (88) T KOG1774 4 EKVQKVMVQPINLIFRFLQNRTRVQIWLFEQVGLRIE 40 (88) T ss_pred CCCCCEECCCHHHHHHHHHCCCCEEEEEEECCCCEEE T ss_conf 2216145276999999986278638998713683776 No 2 >KOG3389 consensus Probab=13.72 E-value=70 Score=15.19 Aligned_cols=17 Identities=47% Similarity=0.411 Sum_probs=13.6 Q ss_pred EEEEEEEEECCCCCCEE Q ss_conf 62323222115876405 Q 537021.9.peg.2 20 TKTCIFSYARNNTDSKI 36 (53) Q Consensus 20 tktcifsyarnntdski 36 (53) .|.-||+-||++|.|.. T Consensus 76 RkvrIf~PAR~~tQSg~ 92 (178) T KOG3389 76 RKVRIFSPARTATQSGS 92 (178) T ss_pred EEEEEECCHHHHHHCCC T ss_conf 05899634044311135 No 3 >pfam11363 DUF3164 Protein of unknown function (DUF3164). This family of proteins has no known function. Probab=11.21 E-value=1.5e+02 Score=13.49 Aligned_cols=32 Identities=47% Similarity=0.541 Sum_probs=23.6 Q ss_pred CCCEEEEEEEEEEEECCCCCCEEEEEEEEEEEHHH Q ss_conf 46168862323222115876405888775224677 Q 537021.9.peg.2 14 SNSVVLTKTCIFSYARNNTDSKIYHYRTISLHLSK 48 (53) Q Consensus 14 snsvvltktcifsyarnntdskiyhyrtislhlsk 48 (53) |--|+-+|+-|--|-|.+.+.+ |+.|+|.++| T Consensus 164 aiqv~gSk~YiR~YeR~~~~g~---~~~I~LDlAk 195 (195) T pfam11363 164 SIQVVGSKSYIRFYERVGDDGK---YEPISLDLAK 195 (195) T ss_pred HHEECCCHHEEEEEEECCCCCC---EEEEEECCCC T ss_conf 8711121214899997289887---7874422569 No 4 >KOG4102 consensus Probab=10.87 E-value=1.3e+02 Score=13.78 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=18.7 Q ss_pred EEEEEHHCCCCCCCEEEEEEEEEEEECCCCCC Q ss_conf 00000320112461688623232221158764 Q 537021.9.peg.2 3 LMYFELMNRKLSNSVVLTKTCIFSYARNNTDS 34 (53) Q Consensus 3 lmyfelmnrklsnsvvltktcifsyarnntds 34 (53) ..--|-||||-|+- -|||--.|+--|| T Consensus 51 vVDNEhMgrkKSKc-----CCIy~kpr~~~es 77 (121) T KOG4102 51 VVDNEHMGRKKSKC-----CCIYHKPRAFDES 77 (121) T ss_pred CCCCCCCCCCCCCE-----EEEEECCCCCCCC T ss_conf 32330026554525-----6887375344765 No 5 >KOG0826 consensus Probab=9.55 E-value=42 Score=16.29 Aligned_cols=37 Identities=35% Similarity=0.486 Sum_probs=24.4 Q ss_pred CCCCCEEEE-------EEEEEEEECCCCCCEEEEEEEEEEEHHH Q ss_conf 124616886-------2323222115876405888775224677 Q 537021.9.peg.2 12 KLSNSVVLT-------KTCIFSYARNNTDSKIYHYRTISLHLSK 48 (53) Q Consensus 12 klsnsvvlt-------ktcifsyarnntdskiyhyrtislhlsk 48 (53) |..|..|++ -+|||+|.+|....-+-+|.+---|+-| T Consensus 309 ~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~r 352 (357) T KOG0826 309 KRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIR 352 (357) T ss_pred CCCCCCEEEECCEEEEHHHHHHHHHHCCCCCCCCCCCHHHHHHH T ss_conf 04788468862568869999999976587886687630999998 No 6 >pfam08863 YolD YolD-like protein. Members of this family are functionally uncharacterized. However it has been predicted that thes proteins are functionally equivalent to the UmuD subunit of polymerase V from gram-negative bacteria. Probab=6.80 E-value=1.5e+02 Score=13.58 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=25.3 Q ss_pred EEHHCCCCCCCEEEEEEEEEEEECCCCCCEEEEE Q ss_conf 0032011246168862323222115876405888 Q 537021.9.peg.2 6 FELMNRKLSNSVVLTKTCIFSYARNNTDSKIYHY 39 (53) Q Consensus 6 felmnrklsnsvvltktcifsyarnntdskiyhy 39 (53) +|.+|++|+-+.--...+.++|-+++--..++-+ T Consensus 28 le~i~~~l~~a~~~~~~v~itY~~dg~~~~~~g~ 61 (92) T pfam08863 28 LEEINELLSQALESEQEILITYYEDGYIETYYGT 61 (92) T ss_pred HHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEE T ss_conf 9999999999974898699999969989999999 No 7 >pfam08902 DUF1848 Domain of unknown function (DUF1848). This family of proteins are functionally uncharacterized. The C-terminus contains a cluster of cysteines that are similar to the iron-sulfur cluster found at the N-terminus of pfam04055. Probab=6.80 E-value=1.6e+02 Score=13.37 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=16.6 Q ss_pred EEEHHCCCCCCCEEEEEEEEEEEEC Q ss_conf 0003201124616886232322211 Q 537021.9.peg.2 5 YFELMNRKLSNSVVLTKTCIFSYAR 29 (53) Q Consensus 5 yfelmnrklsnsvvltktcifsyar 29 (53) .||-|-.+|+. .|+.|++|++. T Consensus 135 ~F~~ia~~L~g---yt~~~viSF~D 156 (264) T pfam08902 135 SFERLAAALSG---YTDRCVISFLD 156 (264) T ss_pred HHHHHHHHHHC---CCCEEEEEEEC T ss_conf 99999998618---26789997113 No 8 >TIGR02609 doc_partner putative addiction module antidote; InterPro: IPR013432 This entry contains putative addiction module antidote proteins encoded by genes that appear recurrently in two-gene operons where the other gene encodes a Doc (death-on-curing) protein IPR006440 from INTERPRO. Note that these proteins tend to be found on bacterial chromosomes, not on plasmids.. Probab=6.58 E-value=2.1e+02 Score=12.84 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=12.2 Q ss_pred CCCCCCEEEE--EEEEEEEECCCCCC Q ss_conf 1124616886--23232221158764 Q 537021.9.peg.2 11 RKLSNSVVLT--KTCIFSYARNNTDS 34 (53) Q Consensus 11 rklsnsvvlt--ktcifsyarnntds 34 (53) ||..||.|.| |-.+-+---+..|. T Consensus 4 rkvGNS~vv~lpKE~l~~L~~~~GDt 29 (77) T TIGR02609 4 RKVGNSLVVTLPKEVLESLGLKEGDT 29 (77) T ss_pred EEEECCEEEEECHHHHHHCCCCCCCE T ss_conf 55505122674748897468999982 No 9 >KOG4510 consensus Probab=6.16 E-value=1.5e+02 Score=13.57 Aligned_cols=19 Identities=47% Similarity=0.767 Sum_probs=15.9 Q ss_pred EEEEEHHCCCCCCCEEEEE Q ss_conf 0000032011246168862 Q 537021.9.peg.2 3 LMYFELMNRKLSNSVVLTK 21 (53) Q Consensus 3 lmyfelmnrklsnsvvltk 21 (53) +|||.+|.-.++..+|.|- T Consensus 113 lmyya~~~mslaDA~vItF 131 (346) T KOG4510 113 LMYYALMYMSLADAVVITF 131 (346) T ss_pred HHHHHHHHCCHHHEEEEEE T ss_conf 9999996204410379985 No 10 >pfam10572 UPF0556 Uncharacterized protein family UPF0556. This family of proteins has no known function. Probab=5.89 E-value=2.7e+02 Score=12.27 Aligned_cols=13 Identities=31% Similarity=0.692 Sum_probs=8.8 Q ss_pred EEEEEEEEECCCC Q ss_conf 6232322211587 Q 537021.9.peg.2 20 TKTCIFSYARNNT 32 (53) Q Consensus 20 tktcifsyarnnt 32 (53) .-+|+|.||-..- T Consensus 45 ~y~CtFtyaaqGG 57 (158) T pfam10572 45 DYKCTFTYAAQGG 57 (158) T ss_pred CEEEEEEEEEECC T ss_conf 5479999995067 Done!