BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.204_1
         (53 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.204_1 
          Length = 53

 Score =  107 bits (267), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 53/53 (100%), Positives = 53/53 (100%)

Query: 1  MGLMYFELMNRKLSNSVVLTKTCIFSYARNNTDSKIYHYRTISLHLSKYLSNL 53
          MGLMYFELMNRKLSNSVVLTKTCIFSYARNNTDSKIYHYRTISLHLSKYLSNL
Sbjct: 1  MGLMYFELMNRKLSNSVVLTKTCIFSYARNNTDSKIYHYRTISLHLSKYLSNL 53


>gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 475

 Score = 21.6 bits (44), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 2/19 (10%)

Query: 12  KLSNSVVLTKTCIFSYARN 30
           KLS+S+ +T+T IF  ARN
Sbjct: 274 KLSSSMTITETAIF--ARN 290


>gi|254780989|ref|YP_003065402.1| GCN5-related N-acetyltransferase [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 185

 Score = 20.8 bits (42), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query: 7  ELMNRKLSNSVVLTKTCIFSYARNNTDSKIYHYRTISL 44
          E+M +   ++  +T   +  Y RNN +  +   R +S 
Sbjct: 29 EVMVKAFLSTQEITDDVLHKYVRNNVEEPLSFVRLMSF 66


>gi|254781134|ref|YP_003065547.1| hypothetical protein CLIBASIA_05180 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 320

 Score = 19.6 bits (39), Expect = 9.3,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 15  NSVVLTKTCIFSYARNNTDSKIYHYRTIS 43
           NS++  KT + + A NN  S  +++ T S
Sbjct: 134 NSLLSDKTFVMNVAHNNRWSSFHNWFTQS 162


>gi|254781083|ref|YP_003065496.1| hypothetical protein CLIBASIA_04925 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 160

 Score = 19.6 bits (39), Expect = 9.3,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 24  IFSYARNNTDSKIYHYRTISLHLSKY 49
           +F Y +        H R++S + +KY
Sbjct: 89  VFEYLKTRLSDLEAHRRSMSFYFAKY 114


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.133    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,680
Number of Sequences: 1233
Number of extensions: 842
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 53
length of database: 328,796
effective HSP length: 25
effective length of query: 28
effective length of database: 297,971
effective search space:  8343188
effective search space used:  8343188
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 31 (16.5 bits)