Query 537021.9.peg.21_1 Match_columns 44 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Sun May 22 12:06:35 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_21.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2kke_A Uncharacterized protei 16.5 49 0.0015 15.5 0.8 12 5-16 42-53 (53) 2 >2ilk_A Interleukin-10; cytoki 11.9 1.2E+02 0.0036 13.6 1.7 33 7-40 12-44 (47) 3 >1tm9_A GI3844938, hypothetica 8.5 1.3E+02 0.0038 13.5 0.9 12 22-33 95-106 (137) 4 >3f3f_C Nucleoporin NUP85; str 8.3 1.7E+02 0.0051 12.9 1.5 22 3-24 38-59 (76) 5 >3lsg_A Two-component response 6.8 1.8E+02 0.0053 12.8 1.0 15 7-21 5-19 (45) 6 >1p94_A Plasmid partition prot 6.1 2.3E+02 0.0067 12.3 1.7 15 7-21 61-75 (76) 7 >2jfn_A Glutamate racemase; ce 5.8 44 0.0013 15.7 -2.6 20 9-28 17-36 (156) 8 >2ooa_A E3 ubiquitin-protein l 5.7 2.4E+02 0.0071 12.1 1.1 18 6-23 12-29 (52) 9 >2hwg_A Phosphoenolpyruvate-pr 5.5 2.5E+02 0.0073 12.1 2.2 22 7-28 85-106 (121) 10 >2d9s_A CBL E3 ubiquitin prote 5.1 2.6E+02 0.0077 12.0 1.2 8 3-10 37-44 (53) No 1 >>2kke_A Uncharacterized protein; protein northeast structural genomics consortium (NESG), target TR5, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} (A:) Probab=16.55 E-value=49 Score=15.50 Aligned_cols=12 Identities=50% Similarity=0.866 Sum_probs=7.7 Q ss_pred HHHHHHHHHHHH Q ss_conf 899999764443 Q 537021.9.peg.2 5 VAKDILNHMEDN 16 (44) Q Consensus 5 vakdilnhmedn 16 (44) ...-||||.||. T Consensus 42 irriilnhlede 53 (53) T 2kke_A 42 IRRIILNHLEDE 53 (53) T ss_dssp HHHHHHHHHHTC T ss_pred HHHHHHHHHCCC T ss_conf 999998651369 No 2 >>2ilk_A Interleukin-10; cytokine; 1.60A {Homo sapiens} (A:114-160) Probab=11.94 E-value=1.2e+02 Score=13.60 Aligned_cols=33 Identities=24% Similarity=0.510 Sum_probs=18.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999764443455658999999888952778875 Q 537021.9.peg.2 7 KDILNHMEDNYLKESYIYFFDIFLIYHDEYFLHE 40 (44) Q Consensus 7 kdilnhmednylkesyiyffdifliyhdeyflhe 40 (44) |...+.|++.-+-. -.-=||||.-|-..|+.-. T Consensus 12 k~~~~klqekGvYK-AMgEfDifinYIE~Yl~~K 44 (47) T 2ilk_A 12 KNAFNKLQEKGIYK-AMSEFDIFINYIEAYMTMK 44 (47) T ss_dssp HHHHHHTTHHHHHH-HHHTHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH T ss_conf 99999873536789-9988999999999999987 No 3 >>1tm9_A GI3844938, hypothetical protein Mg354; all alpha helical protein, structural genomics, PSI, protein structure initiative; NMR {Mycoplasma genitalium} (A:) Probab=8.46 E-value=1.3e+02 Score=13.46 Aligned_cols=12 Identities=42% Similarity=0.891 Sum_probs=4.8 Q ss_pred HHHHHHHHHHHH Q ss_conf 899999988895 Q 537021.9.peg.2 22 YIYFFDIFLIYH 33 (44) Q Consensus 22 yiyffdifliyh 33 (44) -|-|--++..|| T Consensus 95 aiifcv~yflyh 106 (137) T 1tm9_A 95 AIIFCVIYFLYH 106 (137) T ss_dssp HHHHHHHHHHHH T ss_pred EEHHHHHHHHHH T ss_conf 103559999998 No 4 >>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleoporin complex, nuclear pore complex, macromolecular assembly; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B (C:495-570) Probab=8.32 E-value=1.7e+02 Score=12.86 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=15.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4689999976444345565899 Q 537021.9.peg.2 3 YDVAKDILNHMEDNYLKESYIY 24 (44) Q Consensus 3 ydvakdilnhmednylkesyiy 24 (44) -++|+.|.-....+-|++.|+| T Consensus 38 ~~~A~~iy~~~G~k~l~~g~~~ 59 (76) T 3f3f_C 38 PEIAKEIYTTLGNQMLSAHNII 59 (76) T ss_dssp HHHHHHHHHHHHC--------- T ss_pred HHHHHHHHHHHHHHHHHCCCHH T ss_conf 4899999999999999778799 No 5 >>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum} (A:1-45) Probab=6.83 E-value=1.8e+02 Score=12.76 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=10.2 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999976444345565 Q 537021.9.peg.2 7 KDILNHMEDNYLKES 21 (44) Q Consensus 7 kdilnhmednylkes 21 (44) .-|++-||++|-.-+ T Consensus 5 ~~i~~~~ee~ysd~~ 19 (45) T 3lsg_A 5 ELIQNIIEESYTDSQ 19 (45) T ss_dssp HHHHHHHHHHTTCTT T ss_pred HHHHHHHHHHCCCCC T ss_conf 999999997668999 No 6 >>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} (A:) Probab=6.09 E-value=2.3e+02 Score=12.28 Aligned_cols=15 Identities=47% Similarity=0.886 Sum_probs=12.0 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999976444345565 Q 537021.9.peg.2 7 KDILNHMEDNYLKES 21 (44) Q Consensus 7 kdilnhmednylkes 21 (44) .|++|..-|++|+|. T Consensus 61 tdVi~~Lvd~WL~en 75 (76) T 1p94_A 61 TDVVNQLVDNWLKEN 75 (76) T ss_dssp HHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHCC T ss_conf 999999999988626 No 7 >>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli} (A:1-97,A:209-267) Probab=5.83 E-value=44 Score=15.74 Aligned_cols=20 Identities=25% Similarity=0.457 Sum_probs=12.8 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99764443455658999999 Q 537021.9.peg.2 9 ILNHMEDNYLKESYIYFFDI 28 (44) Q Consensus 9 ilnhmednylkesyiyffdi 28 (44) +++++....-.++|||++|- T Consensus 17 Vl~ei~~~lP~~~~iY~~D~ 36 (156) T 2jfn_A 17 VYDEIRHLLPDLHYIYAFDN 36 (156) T ss_dssp ---CEEEEEEEESSSTHHHH T ss_pred CCCCCCEEEEEECCCCHHHH T ss_conf 78999948998489468999 No 8 >>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A (A:) Probab=5.65 E-value=2.4e+02 Score=12.15 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=8.8 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999997644434556589 Q 537021.9.peg.2 6 AKDILNHMEDNYLKESYI 23 (44) Q Consensus 6 akdilnhmednylkesyi 23 (44) .-+|-+-|...|-++.-+ T Consensus 12 ~~eI~~Lm~~GYs~~dv~ 29 (52) T 2ooa_A 12 DAKIAKLXGEGYAFEEVK 29 (52) T ss_dssp HHHHHHHHHTTCCHHHHH T ss_pred HHHHHHHHHCCCCHHHHH T ss_conf 289999998554399999 No 9 >>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} (A:28-148) Probab=5.51 E-value=2.5e+02 Score=12.10 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=14.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999764443455658999999 Q 537021.9.peg.2 7 KDILNHMEDNYLKESYIYFFDI 28 (44) Q Consensus 7 kdilnhmednylkesyiyffdi 28 (44) .+.++.|+|.|++|--.=..|+ T Consensus 85 ~~~f~~~~d~YlreRa~Di~Dv 106 (121) T 2hwg_A 85 ASALEELDDEYLKERAADVRDI 106 (121) T ss_dssp HHHHHHSCCHHHHHHHHHHHHH T ss_pred HHHHHHCCHHHHHHHHHHHHHH T ss_conf 9999854509999878778889 No 10 >>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus} (A:) Probab=5.11 E-value=2.6e+02 Score=11.96 Aligned_cols=8 Identities=50% Similarity=0.808 Sum_probs=0.0 Q ss_pred HHHHHHHH Q ss_conf 46899999 Q 537021.9.peg.2 3 YDVAKDIL 10 (44) Q Consensus 3 ydvakdil 10 (44) .++|++|| T Consensus 37 iemA~~IL 44 (53) T 2d9s_A 37 IEMAKNIL 44 (53) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999999 Done!