Query         537021.9.peg.21_1
Match_columns 44
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Sun May 22 12:06:35 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_21.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2kke_A Uncharacterized protei  16.5      49  0.0015   15.5   0.8   12    5-16     42-53  (53)
  2 >2ilk_A Interleukin-10; cytoki  11.9 1.2E+02  0.0036   13.6   1.7   33    7-40     12-44  (47)
  3 >1tm9_A GI3844938, hypothetica   8.5 1.3E+02  0.0038   13.5   0.9   12   22-33     95-106 (137)
  4 >3f3f_C Nucleoporin NUP85; str   8.3 1.7E+02  0.0051   12.9   1.5   22    3-24     38-59  (76)
  5 >3lsg_A Two-component response   6.8 1.8E+02  0.0053   12.8   1.0   15    7-21      5-19  (45)
  6 >1p94_A Plasmid partition prot   6.1 2.3E+02  0.0067   12.3   1.7   15    7-21     61-75  (76)
  7 >2jfn_A Glutamate racemase; ce   5.8      44  0.0013   15.7  -2.6   20    9-28     17-36  (156)
  8 >2ooa_A E3 ubiquitin-protein l   5.7 2.4E+02  0.0071   12.1   1.1   18    6-23     12-29  (52)
  9 >2hwg_A Phosphoenolpyruvate-pr   5.5 2.5E+02  0.0073   12.1   2.2   22    7-28     85-106 (121)
 10 >2d9s_A CBL E3 ubiquitin prote   5.1 2.6E+02  0.0077   12.0   1.2    8    3-10     37-44  (53)

No 1  
>>2kke_A Uncharacterized protein; protein northeast structural genomics consortium (NESG), target TR5, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} (A:)
Probab=16.55  E-value=49  Score=15.50  Aligned_cols=12  Identities=50%  Similarity=0.866  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             899999764443
Q 537021.9.peg.2    5 VAKDILNHMEDN   16 (44)
Q Consensus         5 vakdilnhmedn   16 (44)
                      ...-||||.||.
T Consensus        42 irriilnhlede   53 (53)
T 2kke_A           42 IRRIILNHLEDE   53 (53)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHCCC
T ss_conf             999998651369


No 2  
>>2ilk_A Interleukin-10; cytokine; 1.60A {Homo sapiens} (A:114-160)
Probab=11.94  E-value=1.2e+02  Score=13.60  Aligned_cols=33  Identities=24%  Similarity=0.510  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999764443455658999999888952778875
Q 537021.9.peg.2    7 KDILNHMEDNYLKESYIYFFDIFLIYHDEYFLHE   40 (44)
Q Consensus         7 kdilnhmednylkesyiyffdifliyhdeyflhe   40 (44)
                      |...+.|++.-+-. -.-=||||.-|-..|+.-.
T Consensus        12 k~~~~klqekGvYK-AMgEfDifinYIE~Yl~~K   44 (47)
T 2ilk_A           12 KNAFNKLQEKGIYK-AMSEFDIFINYIEAYMTMK   44 (47)
T ss_dssp             HHHHHHTTHHHHHH-HHHTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_conf             99999873536789-9988999999999999987


No 3  
>>1tm9_A GI3844938, hypothetical protein Mg354; all alpha helical protein, structural genomics, PSI, protein structure initiative; NMR {Mycoplasma genitalium} (A:)
Probab=8.46  E-value=1.3e+02  Score=13.46  Aligned_cols=12  Identities=42%  Similarity=0.891  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             899999988895
Q 537021.9.peg.2   22 YIYFFDIFLIYH   33 (44)
Q Consensus        22 yiyffdifliyh   33 (44)
                      -|-|--++..||
T Consensus        95 aiifcv~yflyh  106 (137)
T 1tm9_A           95 AIIFCVIYFLYH  106 (137)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             EEHHHHHHHHHH
T ss_conf             103559999998


No 4  
>>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleoporin complex, nuclear pore complex, macromolecular assembly; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B (C:495-570)
Probab=8.32  E-value=1.7e+02  Score=12.86  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4689999976444345565899
Q 537021.9.peg.2    3 YDVAKDILNHMEDNYLKESYIY   24 (44)
Q Consensus         3 ydvakdilnhmednylkesyiy   24 (44)
                      -++|+.|.-....+-|++.|+|
T Consensus        38 ~~~A~~iy~~~G~k~l~~g~~~   59 (76)
T 3f3f_C           38 PEIAKEIYTTLGNQMLSAHNII   59 (76)
T ss_dssp             HHHHHHHHHHHHC---------
T ss_pred             HHHHHHHHHHHHHHHHHCCCHH
T ss_conf             4899999999999999778799


No 5  
>>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum} (A:1-45)
Probab=6.83  E-value=1.8e+02  Score=12.76  Aligned_cols=15  Identities=27%  Similarity=0.408  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999976444345565
Q 537021.9.peg.2    7 KDILNHMEDNYLKES   21 (44)
Q Consensus         7 kdilnhmednylkes   21 (44)
                      .-|++-||++|-.-+
T Consensus         5 ~~i~~~~ee~ysd~~   19 (45)
T 3lsg_A            5 ELIQNIIEESYTDSQ   19 (45)
T ss_dssp             HHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHCCCCC
T ss_conf             999999997668999


No 6  
>>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} (A:)
Probab=6.09  E-value=2.3e+02  Score=12.28  Aligned_cols=15  Identities=47%  Similarity=0.886  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999976444345565
Q 537021.9.peg.2    7 KDILNHMEDNYLKES   21 (44)
Q Consensus         7 kdilnhmednylkes   21 (44)
                      .|++|..-|++|+|.
T Consensus        61 tdVi~~Lvd~WL~en   75 (76)
T 1p94_A           61 TDVVNQLVDNWLKEN   75 (76)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCC
T ss_conf             999999999988626


No 7  
>>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli} (A:1-97,A:209-267)
Probab=5.83  E-value=44  Score=15.74  Aligned_cols=20  Identities=25%  Similarity=0.457  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             99764443455658999999
Q 537021.9.peg.2    9 ILNHMEDNYLKESYIYFFDI   28 (44)
Q Consensus         9 ilnhmednylkesyiyffdi   28 (44)
                      +++++....-.++|||++|-
T Consensus        17 Vl~ei~~~lP~~~~iY~~D~   36 (156)
T 2jfn_A           17 VYDEIRHLLPDLHYIYAFDN   36 (156)
T ss_dssp             ---CEEEEEEEESSSTHHHH
T ss_pred             CCCCCCEEEEEECCCCHHHH
T ss_conf             78999948998489468999


No 8  
>>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A (A:)
Probab=5.65  E-value=2.4e+02  Score=12.15  Aligned_cols=18  Identities=17%  Similarity=0.145  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             999997644434556589
Q 537021.9.peg.2    6 AKDILNHMEDNYLKESYI   23 (44)
Q Consensus         6 akdilnhmednylkesyi   23 (44)
                      .-+|-+-|...|-++.-+
T Consensus        12 ~~eI~~Lm~~GYs~~dv~   29 (52)
T 2ooa_A           12 DAKIAKLXGEGYAFEEVK   29 (52)
T ss_dssp             HHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHH
T ss_conf             289999998554399999


No 9  
>>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} (A:28-148)
Probab=5.51  E-value=2.5e+02  Score=12.10  Aligned_cols=22  Identities=36%  Similarity=0.514  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999764443455658999999
Q 537021.9.peg.2    7 KDILNHMEDNYLKESYIYFFDI   28 (44)
Q Consensus         7 kdilnhmednylkesyiyffdi   28 (44)
                      .+.++.|+|.|++|--.=..|+
T Consensus        85 ~~~f~~~~d~YlreRa~Di~Dv  106 (121)
T 2hwg_A           85 ASALEELDDEYLKERAADVRDI  106 (121)
T ss_dssp             HHHHHHSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCHHHHHHHHHHHHHH
T ss_conf             9999854509999878778889


No 10 
>>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=5.11  E-value=2.6e+02  Score=11.96  Aligned_cols=8  Identities=50%  Similarity=0.808  Sum_probs=0.0

Q ss_pred             HHHHHHHH
Q ss_conf             46899999
Q 537021.9.peg.2    3 YDVAKDIL   10 (44)
Q Consensus         3 ydvakdil   10 (44)
                      .++|++||
T Consensus        37 iemA~~IL   44 (53)
T 2d9s_A           37 IEMAKNIL   44 (53)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             99999999


Done!