Query 537021.9.peg.21_1
Match_columns 44
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Sun May 22 17:42:00 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_21.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kke_A Uncharacterized protein 16.5 35 0.0015 15.5 0.8 12 5-16 42-53 (53)
2 1p94_A Plasmid partition prote 10.4 98 0.0041 13.3 1.7 15 7-21 61-75 (76)
3 3nzt_A Glutamate--cysteine lig 8.8 82 0.0034 13.7 0.7 16 18-33 347-362 (525)
4 1tm9_A GI3844938, hypothetical 8.5 91 0.0038 13.5 0.9 12 22-33 95-106 (137)
5 1va6_A Glutamate--cysteine lig 8.5 85 0.0036 13.6 0.7 17 17-33 341-357 (518)
6 2bju_A Plasmepsin II; aspartic 6.5 87 0.0036 13.6 0.0 21 5-25 93-113 (453)
7 1fqi_A RGS9, regulator of G-pr 4.5 2.1E+02 0.0087 11.7 2.3 17 1-17 109-125 (147)
8 2ooa_A E3 ubiquitin-protein li 4.4 2.1E+02 0.0088 11.7 1.1 18 7-24 13-30 (52)
9 2oo9_A E3 ubiquitin-protein li 3.8 2.4E+02 0.01 11.4 1.1 17 7-23 6-22 (46)
10 2d9s_A CBL E3 ubiquitin protei 2.9 2.9E+02 0.012 11.0 1.1 7 4-10 38-44 (53)
No 1
>2kke_A Uncharacterized protein; protein northeast structural genomics consortium (NESG), target TR5, PSI-2; NMR {Methanothermobacter thermautotrophicusstr}
Probab=16.55 E-value=35 Score=15.50 Aligned_cols=12 Identities=50% Similarity=0.866 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999764443
Q 537021.9.peg.2 5 VAKDILNHMEDN 16 (44)
Q Consensus 5 vakdilnhmedn 16 (44)
...-||||.||.
T Consensus 42 irriilnhlede 53 (53)
T 2kke_A 42 IRRIILNHLEDE 53 (53)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC
T ss_conf 999998651369
No 2
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=10.42 E-value=98 Score=13.30 Aligned_cols=15 Identities=47% Similarity=0.886 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999976444345565
Q 537021.9.peg.2 7 KDILNHMEDNYLKES 21 (44)
Q Consensus 7 kdilnhmednylkes 21 (44)
+|.+|..-||+|+|.
T Consensus 61 tdVi~~Lvd~WL~eN 75 (76)
T 1p94_A 61 TDVVNQLVDNWLKEN 75 (76)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999988626
No 3
>3nzt_A Glutamate--cysteine ligase; structural genomics, center for structural genomics of infec diseases, csgid, alpha and beta proteins; HET: AMP; 2.00A {Francisella tularensis subsp}
Probab=8.75 E-value=82 Score=13.69 Aligned_cols=16 Identities=13% Similarity=0.411 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 5565899999988895
Q 537021.9.peg.2 18 LKESYIYFFDIFLIYH 33 (44)
Q Consensus 18 lkesyiyffdifliyh 33 (44)
..+.-|+|.|+||+|.
T Consensus 347 Is~~~i~FLdlfLlyc 362 (525)
T 3nzt_A 347 ISKDTALFVEVMLMTC 362 (525)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 8989999999999999
No 4
>1tm9_A GI3844938, hypothetical protein Mg354; all alpha helical protein, structural genomics, PSI, protein structure initiative; NMR {Mycoplasma genitalium} SCOP: a.225.1.1
Probab=8.46 E-value=91 Score=13.46 Aligned_cols=12 Identities=42% Similarity=0.891 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999988895
Q 537021.9.peg.2 22 YIYFFDIFLIYH 33 (44)
Q Consensus 22 yiyffdifliyh 33 (44)
-|-|--++..||
T Consensus 95 aiifci~yflyh 106 (137)
T 1tm9_A 95 AIIFCVIYFLYH 106 (137)
T ss_dssp HHHHHHHHHHHH
T ss_pred EEHHHHHHHHHH
T ss_conf 103559999998
No 5
>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel, peptide synthesis, transition state analogue; HET: P2S ADP P6G; 2.10A {Escherichia coli} SCOP: d.128.1.4 PDB: 1v4g_A* 2d32_A* 2d33_A*
Probab=8.45 E-value=85 Score=13.59 Aligned_cols=17 Identities=24% Similarity=0.665 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 45565899999988895
Q 537021.9.peg.2 17 YLKESYIYFFDIFLIYH 33 (44)
Q Consensus 17 ylkesyiyffdifliyh 33 (44)
-..++-|+|.|+||+|.
T Consensus 341 GIs~~~i~FL~lfllyc 357 (518)
T 1va6_A 341 GVDEQQVRFLDLFMVWC 357 (518)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 87889989999999999
No 6
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 2anl_A* 1qs8_A*
Probab=6.54 E-value=87 Score=13.56 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999764443455658999
Q 537021.9.peg.2 5 VAKDILNHMEDNYLKESYIYF 25 (44)
Q Consensus 5 vakdilnhmednylkesyiyf 25 (44)
+-|.|++|--.||+||+|-.|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~ 113 (453)
T 2bju_A 93 ILKTIKTHKLKNYIKESVNFL 113 (453)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 355665410777765345552
No 7
>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD, GAP, signaling protein; 1.94A {Bos taurus} SCOP: a.91.1.1 PDB: 1fqj_B* 1fqk_B*
Probab=4.46 E-value=2.1e+02 Score=11.72 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=11.9
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 94468999997644434
Q 537021.9.peg.2 1 MFYDVAKDILNHMEDNY 17 (44)
Q Consensus 1 mfydvakdilnhmedny 17 (44)
+|..+.+.|+++|+.++
T Consensus 109 ~F~~a~~~V~~~L~~d~ 125 (147)
T 1fqi_A 109 VLDAAQTHIYMLMKKDS 125 (147)
T ss_dssp TTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCH
T ss_conf 99999999999986581
No 8
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=4.40 E-value=2.1e+02 Score=11.69 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999976444345565899
Q 537021.9.peg.2 7 KDILNHMEDNYLKESYIY 24 (44)
Q Consensus 7 kdilnhmednylkesyiy 24 (44)
-+|-.-|...|-++.-+-
T Consensus 13 ~eI~~Lm~~GYs~~dv~r 30 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKR 30 (52)
T ss_dssp HHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHH
T ss_conf 799999986655999999
No 9
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=3.76 E-value=2.4e+02 Score=11.42 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99997644434556589
Q 537021.9.peg.2 7 KDILNHMEDNYLKESYI 23 (44)
Q Consensus 7 kdilnhmednylkesyi 23 (44)
..|-.-|...|-++.-+
T Consensus 6 ~eI~~Lm~~GYs~~~v~ 22 (46)
T 2oo9_A 6 SEIENLMSQGYSYQDIQ 22 (46)
T ss_dssp HHHHHHHHTTBCHHHHH
T ss_pred HHHHHHHHCCCCHHHHH
T ss_conf 89999998677699999
No 10
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=2.94 E-value=2.9e+02 Score=10.99 Aligned_cols=7 Identities=57% Similarity=0.956 Sum_probs=0.0
Q ss_pred HHHHHHH
Q ss_conf 6899999
Q 537021.9.peg.2 4 DVAKDIL 10 (44)
Q Consensus 4 dvakdil 10 (44)
++|++||
T Consensus 38 emA~~IL 44 (53)
T 2d9s_A 38 EMAKNIL 44 (53)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
Done!