Query 537021.9.peg.21_1 Match_columns 44 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Sun May 22 11:57:12 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_21.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1p94a_ a.43.1.3 (A:) Plasmid 12.9 43 0.0032 13.9 1.7 16 6-21 60-75 (76) 2 d2d32a1 d.128.1.4 (A:1-518) Ga 10.9 35 0.0026 14.3 0.7 14 19-32 343-356 (518) 3 d1tm9a_ a.225.1.1 (A:) Hypothe 8.5 52 0.0038 13.5 0.9 12 22-33 95-106 (137) 4 d1fqia_ a.91.1.1 (A:) RGS9, RG 2.9 1.7E+02 0.012 11.0 2.3 19 1-19 102-120 (138) 5 d1h3ob_ a.22.1.3 (B:) TAF(II)- 2.0 2.3E+02 0.017 10.3 1.5 10 7-16 60-69 (74) 6 d2jm5a1 a.91.1.1 (A:3-134) Reg 1.9 2.4E+02 0.017 10.3 2.4 19 1-19 98-116 (132) 7 d2iu5a2 a.121.1.1 (A:72-180) T 1.9 2.4E+02 0.017 10.2 2.1 18 15-32 12-29 (109) 8 d1cmza_ a.91.1.1 (A:) Galpha i 1.9 2.4E+02 0.018 10.2 2.3 18 1-18 98-115 (128) 9 d1zyma1 a.60.10.1 (A:22-144) E 1.9 2.4E+02 0.018 10.2 0.7 11 11-21 95-105 (123) 10 d1e0ea_ a.4.10.1 (A:) N-termin 1.8 2.5E+02 0.018 10.1 1.4 9 4-12 31-39 (46) No 1 >d1p94a_ a.43.1.3 (A:) Plasmid partition protein ParG {Salmonella enterica [TaxId: 28901]} Probab=12.87 E-value=43 Score=13.86 Aligned_cols=16 Identities=44% Similarity=0.814 Sum_probs=12.8 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999976444345565 Q 537021.9.peg.2 6 AKDILNHMEDNYLKES 21 (44) Q Consensus 6 akdilnhmednylkes 21 (44) -+|.+|..-||+|+|. T Consensus 60 itdVi~~Lvd~WL~EN 75 (76) T d1p94a_ 60 ITDVVNQLVDNWLKEN 75 (76) T ss_dssp HHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHCC T ss_conf 9999999999988626 No 2 >d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase GshA {Escherichia coli [TaxId: 562]} Probab=10.87 E-value=35 Score=14.31 Aligned_cols=14 Identities=29% Similarity=0.890 Sum_probs=6.8 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 56589999998889 Q 537021.9.peg.2 19 KESYIYFFDIFLIY 32 (44) Q Consensus 19 kesyiyffdifliy 32 (44) .++-|+|.|+||+| T Consensus 343 s~~~i~FLdlfLly 356 (518) T d2d32a1 343 DEQQVRFLDLFMVW 356 (518) T ss_dssp CHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHH T ss_conf 88898999999999 No 3 >d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma genitalium [TaxId: 2097]} Probab=8.46 E-value=52 Score=13.46 Aligned_cols=12 Identities=42% Similarity=0.891 Sum_probs=4.8 Q ss_pred HHHHHHHHHHHH Q ss_conf 899999988895 Q 537021.9.peg.2 22 YIYFFDIFLIYH 33 (44) Q Consensus 22 yiyffdifliyh 33 (44) -|-|--++..|| T Consensus 95 aiifci~yflyh 106 (137) T d1tm9a_ 95 AIIFCVIYFLYH 106 (137) T ss_dssp HHHHHHHHHHHH T ss_pred EEHHHHHHHHHH T ss_conf 103559999998 No 4 >d1fqia_ a.91.1.1 (A:) RGS9, RGS domain {Cow (Bos taurus) [TaxId: 9913]} Probab=2.95 E-value=1.7e+02 Score=10.99 Aligned_cols=19 Identities=11% Similarity=0.120 Sum_probs=13.3 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 9446899999764443455 Q 537021.9.peg.2 1 MFYDVAKDILNHMEDNYLK 19 (44) Q Consensus 1 mfydvakdilnhmednylk 19 (44) +|..+-+.|+..|+.+++. T Consensus 102 ~F~~aq~~V~~~l~~~~~~ 120 (138) T d1fqia_ 102 VLDAAQTHIYMLMKKDSYA 120 (138) T ss_dssp TTHHHHHHHHHHHHHHTHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9999999999998775777 No 5 >d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]} Probab=2.03 E-value=2.3e+02 Score=10.35 Aligned_cols=10 Identities=40% Similarity=0.640 Sum_probs=3.4 Q ss_pred HHHHHHHHHH Q ss_conf 9999764443 Q 537021.9.peg.2 7 KDILNHMEDN 16 (44) Q Consensus 7 kdilnhmedn 16 (44) ||+.-|.|-| T Consensus 60 kDvql~LeR~ 69 (74) T d1h3ob_ 60 KDVQLHLERQ 69 (74) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999833 No 6 >d2jm5a1 a.91.1.1 (A:3-134) Regulator of G-protein signaling 18, RGS18 {Human (Homo sapiens) [TaxId: 9606]} Probab=1.93 E-value=2.4e+02 Score=10.27 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=12.0 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 9446899999764443455 Q 537021.9.peg.2 1 MFYDVAKDILNHMEDNYLK 19 (44) Q Consensus 1 mfydvakdilnhmednylk 19 (44) +|..+-+.|...|+++++. T Consensus 98 ~F~~aq~~V~~~l~~~~yp 116 (132) T d2jm5a1 98 SFDAAQSRVYQLMEQDSYT 116 (132) T ss_dssp TTHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9999999999998766625 No 7 >d2iu5a2 a.121.1.1 (A:72-180) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]} Probab=1.91 E-value=2.4e+02 Score=10.25 Aligned_cols=18 Identities=39% Similarity=0.694 Sum_probs=14.0 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 434556589999998889 Q 537021.9.peg.2 15 DNYLKESYIYFFDIFLIY 32 (44) Q Consensus 15 dnylkesyiyffdifliy 32 (44) -.||.|.-|++-.||.|- T Consensus 12 lryldenqifyqkifvid 29 (109) T d2iu5a2 12 LRYLDENQIFYQKIFVID 29 (109) T ss_dssp HHHHHHTHHHHHHHHHHC T ss_pred HHHCCCCCEEHEEEEEEC T ss_conf 998141202030456870 No 8 >d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo sapiens) [TaxId: 9606]} Probab=1.89 E-value=2.4e+02 Score=10.23 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=10.1 Q ss_pred CHHHHHHHHHHHHHHHHH Q ss_conf 944689999976444345 Q 537021.9.peg.2 1 MFYDVAKDILNHMEDNYL 18 (44) Q Consensus 1 mfydvakdilnhmednyl 18 (44) +|..+-+.|...|+.+++ T Consensus 98 ~F~~aq~~V~~~l~~~~~ 115 (128) T d1cmza_ 98 TFDDAQLQIYTLMHRDSY 115 (128) T ss_dssp STHHHHHHHHHHHHHHTH T ss_pred HHHHHHHHHHHHHHHCCC T ss_conf 999999999999875731 No 9 >d1zyma1 a.60.10.1 (A:22-144) Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain {Escherichia coli [TaxId: 562]} Probab=1.87 E-value=2.4e+02 Score=10.21 Aligned_cols=11 Identities=45% Similarity=0.933 Sum_probs=4.7 Q ss_pred HHHHHHHHHHH Q ss_conf 76444345565 Q 537021.9.peg.2 11 NHMEDNYLKES 21 (44) Q Consensus 11 nhmednylkes 21 (44) ..|+|.|++|- T Consensus 95 ~~~~d~YlreR 105 (123) T d1zyma1 95 EELDDEYLKER 105 (123) T ss_dssp SSSCCHHHHHH T ss_pred HHCCCHHHHHH T ss_conf 87778899988 No 10 >d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]} Probab=1.79 E-value=2.5e+02 Score=10.14 Aligned_cols=9 Identities=44% Similarity=0.549 Sum_probs=0.0 Q ss_pred HHHHHHHHH Q ss_conf 689999976 Q 537021.9.peg.2 4 DVAKDILNH 12 (44) Q Consensus 4 dvakdilnh 12 (44) .|||.|.+. T Consensus 31 ~vAr~IV~~ 39 (46) T d1e0ea_ 31 LVARQIVNS 39 (46) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 999999997 Done!