RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.21_1
         (44 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl reductase,
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 2006

 Score = 24.5 bits (53), Expect = 6.1
 Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 6    AKDILNHMEDNYLKESYIY-FFDIFL 30
            A+D+ N   DN+ K++Y +   DI +
Sbjct: 1642 AQDVWNR-ADNHFKDTYGFSILDIVI 1666



 Score = 24.1 bits (52), Expect = 8.4
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 2   FYDVAKDILNHMEDNYLKESYI 23
           F  V    L   E+ YL+ + I
Sbjct: 80  FDQVLNLCLTEFENCYLEGNDI 101


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.336    0.155    0.487 

Gapped
Lambda     K      H
   0.267   0.0561    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 436,113
Number of extensions: 13297
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 11
Length of query: 44
Length of database: 5,693,230
Length adjustment: 17
Effective length of query: 27
Effective length of database: 5,281,082
Effective search space: 142589214
Effective search space used: 142589214
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.4 bits)