RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.21_1
         (44 letters)



>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic
           enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
          Length = 308

 Score = 25.3 bits (55), Expect = 1.4
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 1   MFYDVAKDILNHMEDNYLKESYIY--FFDIFLI 31
           +F   AK + + + ++ LK   +Y    +I  I
Sbjct: 207 LFLLAAKKVASCVTEDSLKVGRVYPQLKEIREI 239


>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic
           enzyme {Human (Homo sapiens) [TaxId: 9606]}
          Length = 294

 Score = 24.2 bits (52), Expect = 3.1
 Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 1   MFYDVAKDILNHMEDNYLKESYIY--FFDIFLI 31
           +F + AK + + + D  L +  +Y    +I  +
Sbjct: 211 VFLEAAKALTSQLTDEELAQGRLYPPLANIQEV 243


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.336    0.155    0.487 

Gapped
Lambda     K      H
   0.267   0.0559    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 191,703
Number of extensions: 6024
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 11
Length of query: 44
Length of database: 2,407,596
Length adjustment: 16
Effective length of query: 28
Effective length of database: 2,187,916
Effective search space: 61261648
Effective search space used: 61261648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 47 (22.3 bits)