Query         537021.9.peg.218_1
Match_columns 39
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed May 25 16:08:44 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_218.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2p38_A Protein involved in ri  12.2      37  0.0011   16.6  -0.8   29    8-36     11-41  (72)
  2 >2jc9_A Cytosolic purine 5'-nu  12.2      57  0.0017   15.7   0.1   11   10-20     45-55  (72)
  3 >3cvz_A S-layer protein; surfa  10.5   1E+02   0.003   14.4   1.0   16    8-23     79-94  (143)
  4 >2jza_A Nitrite reductase [NAD   9.3 1.6E+02  0.0048   13.4   1.7   22   15-37     48-69  (90)
  5 >1olz_A Semaphorin 4D; develop   6.4 2.3E+02  0.0068   12.7   1.4   38    2-39      8-45  (135)
  6 >1ez0_A ALDH, aldehyde dehydro   6.2   2E+02   0.006   13.0   1.0   17   11-27    249-268 (312)
  7 >2c7h_A RBBP6, retinoblastoma-   6.2 2.1E+02  0.0061   12.9   1.0   14   18-31     67-80  (86)
  8 >2h2z_A PP1AB, ORF1AB, replica   5.9 1.1E+02  0.0034   14.2  -0.4   15    6-20    135-149 (189)
  9 >2zu2_A 3C-like proteinase; pr   5.8 1.2E+02  0.0035   14.1  -0.4   15    6-20    134-148 (190)
 10 >1lvo_A Replicase, hydrolase d   5.7 1.2E+02  0.0035   14.1  -0.4   13    6-18    134-146 (190)

No 1  
>>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi} (A:95-166)
Probab=12.18  E-value=37  Score=16.61  Aligned_cols=29  Identities=17%  Similarity=0.032  Sum_probs=15.8

Q ss_pred             ECCEEEECC--CCCCCCCCEEEEEEEEEEEE
Q ss_conf             310353113--54211210012236899997
Q 537021.9.peg.2    8 EDSFLYGKM--GSTAARSTSVINRRYVQISM   36 (39)
Q Consensus         8 edsflygkm--gstaarstsvinrryvqism   36 (39)
                      |-+||||+-  .+.-.|-+.-.+...|-.||
T Consensus        11 e~~FLYG~dV~k~~i~rite~~~~gVvV~n~   41 (72)
T 2p38_A           11 SFLFTTGKDAPKEAVREIKWQGSKRVVVLND   41 (72)
T ss_dssp             HHHHHTTCCBCGGGEEEEECSSCSEEEEECT
T ss_pred             EEEEEECCCCHHHHHEEECCCCCCEEEEEEC
T ss_conf             4777416752054404753578870999957


No 2  
>>2jc9_A Cytosolic purine 5'-nucleotidase; cytosolic 5-prime nucleotidase II, GMP-IMP specific nucleotidase, CN-II, NT5C2, hydrolase, polymorphism; HET: ADN; 1.5A {Homo sapiens} PDB: 2j2c_A* 2jcm_A* (A:406-477)
Probab=12.16  E-value=57  Score=15.69  Aligned_cols=11  Identities=45%  Similarity=0.700  Sum_probs=7.8

Q ss_pred             CEEEECCCCCC
Q ss_conf             03531135421
Q 537021.9.peg.2   10 SFLYGKMGSTA   20 (39)
Q Consensus        10 sflygkmgsta   20 (39)
                      ..-||+|||.-
T Consensus        45 d~~yg~~GSlF   55 (72)
T 2jc9_A           45 DMCYGMMGSLF   55 (72)
T ss_dssp             HHTTCTTCCSS
T ss_pred             HHHHHHHHHHC
T ss_conf             87774422333


No 3  
>>3cvz_A S-layer protein; surface layer protein, protein binding, structural protein; 2.40A {Clostridium difficile} (A:94-236)
Probab=10.51  E-value=1e+02  Score=14.44  Aligned_cols=16  Identities=31%  Similarity=0.391  Sum_probs=12.3

Q ss_pred             ECCEEEECCCCCCCCC
Q ss_conf             3103531135421121
Q 537021.9.peg.2    8 EDSFLYGKMGSTAARS   23 (39)
Q Consensus         8 edsflygkmgstaars   23 (39)
                      .++|.||..|+..|-.
T Consensus        79 ~~~~~YGt~gd~tAg~   94 (143)
T 3cvz_A           79 AVEDKYGKVGDSTAGI   94 (143)
T ss_dssp             CCCCEEECTTCSSCCE
T ss_pred             CCCCCEECCCCCCEEE
T ss_conf             3433300004653046


No 4  
>>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} (A:1-50,A:91-130)
Probab=9.29  E-value=1.6e+02  Score=13.40  Aligned_cols=22  Identities=45%  Similarity=0.335  Sum_probs=17.8

Q ss_pred             CCCCCCCCCCEEEEEEEEEEEEE
Q ss_conf             13542112100122368999974
Q 537021.9.peg.2   15 KMGSTAARSTSVINRRYVQISMK   37 (39)
Q Consensus        15 kmgstaarstsvinrryvqismk   37 (39)
                      -+||.||-.|.|.|. -||||..
T Consensus        48 H~g~~~~~~~~~~~~-~~~~~~~   69 (90)
T 2jza_A           48 FAQSVAAYDTQVTNG-NVQISIA   69 (90)
T ss_dssp             TTSCCBCCCEEESSS-EEEEECC
T ss_pred             CCCCCCCCCEEEECC-EEEEEEC
T ss_conf             767777401799899-9999858


No 5  
>>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} (A:135-259,A:310-319)
Probab=6.41  E-value=2.3e+02  Score=12.67  Aligned_cols=38  Identities=24%  Similarity=0.339  Sum_probs=21.6

Q ss_pred             EEEEEEECCEEEECCCCCCCCCCEEEEEEEEEEEEECC
Q ss_conf             39999731035311354211210012236899997429
Q 537021.9.peg.2    2 TFTMTIEDSFLYGKMGSTAARSTSVINRRYVQISMKTE   39 (39)
Q Consensus         2 tftmtiedsflygkmgstaarstsvinrryvqismkte   39 (39)
                      .++..+-|.-||.-.-+.-..+..+|-|.-.+-+++||
T Consensus         8 ~~tal~~dG~LYsgt~~df~g~d~~I~Rs~g~~~lrTe   45 (135)
T 1olz_A            8 SYTSVMVDGELYSGTSYNFLGSEPIISRNSSHSPLRTE   45 (135)
T ss_dssp             CEEEEEETTEEEEEEESSTTSCSEEEEEECSSCCBCCC
T ss_pred             CEEEEEECCEEEEEEECCCCCCCCCEEECCCCCCCCHH
T ss_conf             97899989989999855668998617832788875301


No 6  
>>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} (A:1-256,A:455-510)
Probab=6.24  E-value=2e+02  Score=12.96  Aligned_cols=17  Identities=47%  Similarity=0.634  Sum_probs=11.9

Q ss_pred             EEEECCCC---CCCCCCEEE
Q ss_conf             35311354---211210012
Q 537021.9.peg.2   11 FLYGKMGS---TAARSTSVI   27 (39)
Q Consensus        11 flygkmgs---taarstsvi   27 (39)
                      -+|+.||+   |..|+|||=
T Consensus       249 p~~~ElGGp~~~~~~~t~vg  268 (312)
T 1ez0_A          249 PFYGELGAPASTHSASTSVG  268 (312)
T ss_dssp             CEEEECCCTSCSCSSCCSSS
T ss_pred             EEECCCCCCCCCCCCCCCCH
T ss_conf             24313688881799876654


No 7  
>>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens} (A:)
Probab=6.18  E-value=2.1e+02  Score=12.90  Aligned_cols=14  Identities=36%  Similarity=0.489  Sum_probs=10.4

Q ss_pred             CCCCCCCEEEEEEE
Q ss_conf             42112100122368
Q 537021.9.peg.2   18 STAARSTSVINRRY   31 (39)
Q Consensus        18 staarstsvinrry   31 (39)
                      .--.|++|||-||-
T Consensus        67 ~lIpknssViVrRv   80 (86)
T 2c7h_A           67 ALIPKNSSVIVRRI   80 (86)
T ss_dssp             CEEETTCCEEEEEE
T ss_pred             EEEECCCEEEEEEC
T ss_conf             38817878999962


No 8  
>>2h2z_A PP1AB, ORF1AB, replicase polyprotein 1AB; main protease, authentic N and C termini, viral protein; 1.60A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ... (A:1-189)
Probab=5.92  E-value=1.1e+02  Score=14.17  Aligned_cols=15  Identities=53%  Similarity=0.771  Sum_probs=12.0

Q ss_pred             EEECCEEEECCCCCC
Q ss_conf             973103531135421
Q 537021.9.peg.2    6 TIEDSFLYGKMGSTA   20 (39)
Q Consensus         6 tiedsflygkmgsta   20 (39)
                      ||..|||-|.-||..
T Consensus       135 TIkgSFl~GaCGSvG  149 (189)
T 2h2z_A          135 TIKGSFLNGSCGSVG  149 (189)
T ss_dssp             CBCCCCCTTCTTCEE
T ss_pred             CEEEEEECCCCCCCC
T ss_conf             078888746578883


No 9  
>>2zu2_A 3C-like proteinase; protease-inhibitor complex, cytoplasm, hydrolase, membrane, metal-binding, protease, ribosomal frameshifting; 1.80A {Human coronavirus 229E} PDB: 1p9s_A (A:1-190)
Probab=5.75  E-value=1.2e+02  Score=14.09  Aligned_cols=15  Identities=47%  Similarity=0.718  Sum_probs=12.0

Q ss_pred             EEECCEEEECCCCCC
Q ss_conf             973103531135421
Q 537021.9.peg.2    6 TIEDSFLYGKMGSTA   20 (39)
Q Consensus         6 tiedsflygkmgsta   20 (39)
                      ||..|||-|.-||..
T Consensus       134 TIkgSFl~GaCGSvG  148 (190)
T 2zu2_A          134 TIRGSFINGACGSPG  148 (190)
T ss_dssp             CBCCCCCTTCTTCEE
T ss_pred             CEEEEEECCCCCCCC
T ss_conf             088888736578983


No 10 
>>1lvo_A Replicase, hydrolase domain; 3C like, corona, proteinase, chymotrypsin, cysteine histidine DYAD, beta barrel; 1.96A {Transmissible gastroenteritis virus} (A:1-190)
Probab=5.73  E-value=1.2e+02  Score=14.08  Aligned_cols=13  Identities=54%  Similarity=0.825  Sum_probs=0.0

Q ss_pred             EEECCEEEECCCC
Q ss_conf             9731035311354
Q 537021.9.peg.2    6 TIEDSFLYGKMGS   18 (39)
Q Consensus         6 tiedsflygkmgs   18 (39)
                      ||..|||-|.-||
T Consensus       134 TIkgSFl~GaCGS  146 (190)
T 1lvo_A          134 TIKGSFIAGTCGS  146 (190)
T ss_dssp             CBCCCCCTTCTTC
T ss_pred             CEEEEEECCCCCC
T ss_conf             1788887465789


Done!